BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0597.p         (141 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1522 [K] COG0782 Transcription elongation factor Rso Ralstoni...   164   7e-41
NMA1643 [K] COG0782 Transcription elongation factor NmA Neisseri...   156   1e-38
NMB1430 [K] COG0782 Transcription elongation factor Nme Neisseri...   154   6e-38
XF1108 [K] COG0782 Transcription elongation factor Xfa Xylella f...   137   5e-33
PM0715 [K] COG0782 Transcription elongation factor Pmu Pasteurel...   135   2e-32

>RSc1522 [K] COG0782 Transcription elongation factor Rso Ralstonia
           solanacearum
          Length = 158

 Score =  164 bits (414), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 102/130 (78%), Gaps = 2/130 (1%)

Query: 12  NAEYXPRAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVF 71
           NA    RAQGDLSENA+YDAAKERQ FIEGRI ++E KL ++ ++DPA L   ADGR+VF
Sbjct: 31  NAIAEARAQGDLSENADYDAAKERQGFIEGRILEIESKLAAAQVIDPAGLD--ADGRIVF 88

Query: 72  AATVDLENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVR 131
            AT+DLE+LDSG+ VTYQIVG DEAD+   K+S++SPIARALIGK  GDV  V AP G R
Sbjct: 89  GATIDLEDLDSGKPVTYQIVGDDEADLDSGKISISSPIARALIGKYEGDVATVVAPGGER 148

Query: 132 EYEILKVRYV 141
           EYE+  V+Y+
Sbjct: 149 EYEVRAVKYL 158


>NMA1643 [K] COG0782 Transcription elongation factor NmA Neisseria
           meningitidis Z2491
          Length = 158

 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/124 (62%), Positives = 97/124 (78%), Gaps = 2/124 (1%)

Query: 18  RAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVFAATVDL 77
           R+ GDLSENAEY+AAKERQ FIEGRI++LE KL  + I++P  +   A+G++VF  TV L
Sbjct: 37  RSHGDLSENAEYEAAKERQGFIEGRISELEHKLSVAHIINPTEIH--AEGKIVFGTTVTL 94

Query: 78  ENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVREYEILK 137
           E+L++ E VTYQIVG DEADIK  K+ V SPIARALIGK  GD   V+AP GVREY+I++
Sbjct: 95  EDLETEEHVTYQIVGEDEADIKQGKIYVGSPIARALIGKEEGDTAEVQAPGGVREYDIIE 154

Query: 138 VRYV 141
           VRY+
Sbjct: 155 VRYI 158


>NMB1430 [K] COG0782 Transcription elongation factor Nme Neisseria
           meningitidis MC58
          Length = 158

 Score =  154 bits (388), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 96/124 (77%), Gaps = 2/124 (1%)

Query: 18  RAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVFAATVDL 77
           R+ GDLSENAEY+AAKERQ FIEGRI++LE KL  + I++P  +   A+G++VF  TV L
Sbjct: 37  RSHGDLSENAEYEAAKERQGFIEGRISELEHKLSVAHIINPTEIH--AEGKIVFGTTVTL 94

Query: 78  ENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVREYEILK 137
           E+L++ E V YQIVG DEADIK  K+ V SPIARALIGK  GD   V+AP GVREY+I++
Sbjct: 95  EDLETEEHVIYQIVGEDEADIKQGKIYVGSPIARALIGKEEGDTAEVQAPGGVREYDIIE 154

Query: 138 VRYV 141
           VRY+
Sbjct: 155 VRYI 158


>XF1108 [K] COG0782 Transcription elongation factor Xfa Xylella fastidiosa
           9a5c
          Length = 154

 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 95/130 (73%), Gaps = 2/130 (1%)

Query: 12  NAEYXPRAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVF 71
           NA    RA GDL ENAEY AA+E+Q+FIEGRI  LEG+L  + ++D A L++G   ++VF
Sbjct: 26  NAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQLEGELSHAEVIDVAKLNAGT--KIVF 83

Query: 72  AATVDLENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVR 131
            ATV L +L++ E+  YQIVG  EADIK   V+++SP+ARALIGK  GD + +EAP+G R
Sbjct: 84  GATVTLVDLETDEESRYQIVGDLEADIKQGLVAISSPVARALIGKQEGDTIVIEAPAGRR 143

Query: 132 EYEILKVRYV 141
           EYE++ V Y+
Sbjct: 144 EYEVVAVEYI 153


>PM0715 [K] COG0782 Transcription elongation factor Pmu Pasteurella
           multocida
          Length = 158

 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 91/129 (70%), Gaps = 2/129 (1%)

Query: 12  NAEYXPRAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVF 71
           NA    R  GDL ENAEY AA+E+Q F EGRI ++EGKL +S I+D   + +  +G+V+F
Sbjct: 31  NAIAEAREHGDLKENAEYHAAREQQGFCEGRIQEIEGKLANSQIIDVTKIPN--NGKVIF 88

Query: 72  AATVDLENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVR 131
            AT+ L N+D+ E+V+YQIVG DEA+IK   +SV SPIAR LIGK   DVV ++ P G  
Sbjct: 89  GATILLLNIDTEEEVSYQIVGDDEANIKAGLISVNSPIARGLIGKEVDDVVVIQTPGGKV 148

Query: 132 EYEILKVRY 140
           E+EIL+V Y
Sbjct: 149 EFEILEVEY 157