BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0594.p         (127 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1967 [R] COG3193 Uncharacterized protein, possibly involved i...   167   5e-42
glcG [R] COG3193 Uncharacterized protein, possibly involved in u...   115   2e-26
PA5352 [R] COG3193 Uncharacterized protein, possibly involved in...   104   4e-23
CC2181 Non COG                                                         77   9e-15

>RSc1967 [R] COG3193 Uncharacterized protein, possibly involved in
           utilization of glycolate and propanediol Rso Ralstonia
           solanacearum
          Length = 137

 Score =  167 bits (423), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 103/133 (77%), Gaps = 8/133 (6%)

Query: 1   MQTKPYLTLDDLKKIAAGAEAEAKANNWAVVIAIVD--------XRLDGAAPASSHIAPA 52
           M+TKP LT +D+ KI   AE EA+A+ WAV IA+VD         R+DG A  S++IAP 
Sbjct: 1   MKTKPCLTQEDVNKILDAAEKEARAHQWAVTIAVVDDGGHPLGLRRMDGCASISAYIAPE 60

Query: 53  KAKTAALGRRETKIYEDMINNGRFSFLCAPELDGLLEGGVPIVVDGQCVGAVGVSGVKSS 112
           KA+TAALGRRE+KIYED+INNGR SFL  P L G+LEGGVPI+V+G C GAVGVSGVKS+
Sbjct: 61  KARTAALGRRESKIYEDIINNGRTSFLSVPLLHGMLEGGVPILVEGVCAGAVGVSGVKSA 120

Query: 113 EDVQIGKAGIAAL 125
           EDVQI KAGIAA+
Sbjct: 121 EDVQIAKAGIAAV 133


>glcG [R] COG3193 Uncharacterized protein, possibly involved in
           utilization of glycolate and propanediol Eco Escherichia
           coli K12
          Length = 134

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 80/117 (68%), Gaps = 9/117 (7%)

Query: 1   MQTKPYLTLDDLKKIAAGAEAEAKANNWAVVIAIVD--------XRLDGAAPASSHIAPA 52
           M+TK  L+      I A  + EA+ NNW+V IA+ D         R+D  AP +++I+  
Sbjct: 1   MKTKVILSQQMASAIIAAGQEEAQKNNWSVSIAVADDGGHLLALSRMDDCAPIAAYISQE 60

Query: 53  KAKTAALGRRETKIYEDMINNGRFSFLCAPELDGLLEGGVPIVVDGQCVGAVGVSGV 109
           KA+TAALGRRETK YE+M+NNGR +F+ AP L   LEGGVP+VVDGQ +GAVGVSG+
Sbjct: 61  KARTAALGRRETKGYEEMVNNGRTAFVTAPLLTS-LEGGVPVVVDGQIIGAVGVSGL 116


>PA5352 [R] COG3193 Uncharacterized protein, possibly involved in
           utilization of glycolate and propanediol Pae Pseudomonas
           aeruginosa
          Length = 133

 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 88/133 (66%), Gaps = 8/133 (6%)

Query: 1   MQTKPYLTLDDLKKIAAGAEAEAKANNWAVVIAIVD--------XRLDGAAPASSHIAPA 52
           M +KP L  +++ ++   A  EA+   WAV IA+VD         RLDG AP  ++IA  
Sbjct: 1   MHSKPVLGREEVARVLGAAREEAQRQGWAVSIAVVDDGGHPLALERLDGCAPIGAYIATE 60

Query: 53  KAKTAALGRRETKIYEDMINNGRFSFLCAPELDGLLEGGVPIVVDGQCVGAVGVSGVKSS 112
           KA++AALGRRETK YEDMIN GR +FL  P L   LEGGVPI+VDGQ VGAVGVSGV++ 
Sbjct: 61  KARSAALGRRETKRYEDMINGGRSAFLSVPLLQATLEGGVPILVDGQVVGAVGVSGVRAE 120

Query: 113 EDVQIGKAGIAAL 125
           ED ++ + G   L
Sbjct: 121 EDARVARIGAEGL 133


>CC2181 Non COG
          Length = 163

 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 10/127 (7%)

Query: 7   LTLDDLKKIAAGAEAEAKANNWAVVIAIVDX--------RLDGAAPASSHIAPAKAKTAA 58
           +TL + K I A AEAEA+ N W +   +V+         ++DG    S+ +A  KA+TAA
Sbjct: 38  VTLAEAKSIVAAAEAEARKNGWTMTFVVVESNGQPVLLEKMDGTQYGSTEVAMKKAQTAA 97

Query: 59  LGRRETKIYEDMINNGRFSFLCAPELDGLLEGGVPIVVDGQCVGAVGVSGVKSSEDVQIG 118
             RR T +++D + +G  + +    +   +EGG  ++ DG+ VGA+GVSG  S++D  + 
Sbjct: 98  NFRRPTLVFQDAVKSGTLNAIFTGAM--AVEGGELLLADGKIVGAIGVSGGTSAQDGVVA 155

Query: 119 KAGIAAL 125
           +AG AA+
Sbjct: 156 RAGQAAI 162