BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0582.p (260 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport... 194 1e-49 mlr9038 Non COG 191 1e-48 PA1071 [E] COG0411 ABC-type branched-chain amino acid transport ... 186 4e-47 DR2119 [E] COG0411 ABC-type branched-chain amino acid transport ... 186 4e-47 livG [E] COG0411 ABC-type branched-chain amino acid transport sy... 186 5e-47 >RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 257 Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 105/249 (42%), Positives = 156/249 (62%), Gaps = 14/249 (5%) Query: 20 LARVTNLTRRFGGLVAVSDLNMEIRRQEILGLIGPNGAGKSTTFNLISGFFKPSSGRLYF 79 L + + +RFGGL A+SD+++EIR EI GLIGPNGAGK+T FN+I+G + P +G Sbjct: 6 LLSIRGVNKRFGGLQALSDVSLEIREGEIYGLIGPNGAGKTTFFNVITGLYTPDAGEFVL 65 Query: 80 DGKDMTGKSALEISRAGLVRTFQHGSLMRSMSVYENILI--------GAIGALPR-GTKK 130 G+ + E+++AG+ RTFQ+ L M+ EN+++ G IGA+ R + Sbjct: 66 AGQPYQPTAVHEVAKAGIARTFQNIRLFGDMTAAENVMVGRHVRTKAGLIGAVFRTKAAR 125 Query: 131 ERAARVEETA----EMLGLGPYLNEIAGTLPHGIQRLISIAIASAPRPKLLCLDEPLTGL 186 E A +E+ A + +G+G Y N A L +G QR + IA A A +PKLL LDEP G+ Sbjct: 126 EEEASIEDWAHDLLDYVGIGKYANYTARNLSYGHQRRLEIARALATQPKLLALDEPAAGM 185 Query: 187 NQTEVMTTLGVFEKIRQVFGCTILLVEHNMKAVMQICDRIVVLHHGQLLATGTPDEIRHD 246 N TE + G+ +KIR G TILL+EH++K VM +C+R+ VL +G+++A G P E++ + Sbjct: 186 NATEKVELRGLLDKIRSD-GKTILLIEHDVKLVMGLCNRLTVLDYGKVIAQGLPHEVQSN 244 Query: 247 DTVVSAYLG 255 V+ AYLG Sbjct: 245 QAVIEAYLG 253 >mlr9038 Non COG Length = 252 Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 108/247 (43%), Positives = 153/247 (61%), Gaps = 13/247 (5%) Query: 23 VTNLTRRFGGLVAVSDLNMEIRRQEILGLIGPNGAGKSTTFNLISGFFKPSSGRLYFDGK 82 V ++R FG L AV + + + + +I GLIGPNG+GKSTT NLISG K S+G++ +G+ Sbjct: 4 VREISRAFGRLKAVDGVTLSVTKNQIRGLIGPNGSGKSTTMNLISGSLKLSAGKIELEGQ 63 Query: 83 DMTGKSALEISRAGLVRTFQHGSLMRSMSVYENILIGAIGA----------LPRGTKKER 132 + GK I+R GL+RTFQ + S ++ + + +G A +P G + E Sbjct: 64 RIEGKEQHRIARLGLIRTFQLTRVFTSGTLLDAVALGVRAASGSPWSPARWIPAGDQAEV 123 Query: 133 AARVEETAEMLGLGPYLNEIAGTLPHGIQRLISIAIASAPRPKLLCLDEPLTGLNQTEVM 192 E +GL NE+AG LP G++R++SIA A A RPK++ LDEPL GLN TE Sbjct: 124 NQAALVALERMGLAHRANELAGNLPGGLRRILSIATALAARPKIMLLDEPLAGLNATEKA 183 Query: 193 TTLGVFEKIRQVFGCTILLVEHNMKAVMQICDRIVVLHHGQLLATGTPDEI-RHDDTVVS 251 EK+R +ILLVEH+M++VM++CDRI VL+ GQ++A GTP EI RH D V+ Sbjct: 184 EVANRIEKLR-ADDVSILLVEHDMRSVMRLCDRITVLNFGQVIAEGTPAEIGRHPD-VIK 241 Query: 252 AYLGKRH 258 AYLG++ Sbjct: 242 AYLGQKR 248 >PA1071 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Pae Pseudomonas aeruginosa Length = 255 Score = 186 bits (473), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 100/248 (40%), Positives = 150/248 (60%), Gaps = 15/248 (6%) Query: 23 VTNLTRRFGGLVAVSDLNMEIRRQEILGLIGPNGAGKSTTFNLISGFFKPSSGRLYFDGK 82 V+ LT RFGGL+AV+ +N+++ ++++ +IGPNGAGK+T FN ++GF++P+ G + DG+ Sbjct: 8 VSGLTMRFGGLLAVNGVNLKVEEKQVVSMIGPNGAGKTTVFNCLTGFYQPTGGLIRLDGE 67 Query: 83 DMTGKSALEISRAGLVRTFQHGSLMRSMSVYENILIG-----------AIGALPRGTKKE 131 ++ G +I+R G+VRTFQ+ L + M+ EN+L+ + P + E Sbjct: 68 EIQGLPGHKIARKGVVRTFQNVRLFKEMTAVENLLVAQHRHLNTNFLAGLFKTPAFRRSE 127 Query: 132 RAARVEETAEML---GLGPYLNEIAGTLPHGIQRLISIAIASAPRPKLLCLDEPLTGLNQ 188 R A +E A L L + N AGTL +G QR + IA RP++L LDEP GLN Sbjct: 128 REA-MEYAAHWLEEVNLTEFANRSAGTLAYGQQRRLEIARCMMTRPRILMLDEPAAGLNP 186 Query: 189 TEVMTTLGVFEKIRQVFGCTILLVEHNMKAVMQICDRIVVLHHGQLLATGTPDEIRHDDT 248 E + K+R T+LL+EH+MK VM I D IVV++ G LA GTP++IR + Sbjct: 187 KETDDLKALIAKLRSEHNVTVLLIEHDMKLVMSISDHIVVINQGAPLADGTPEQIRDNPD 246 Query: 249 VVSAYLGK 256 V+ AYLG+ Sbjct: 247 VIKAYLGE 254 >DR2119 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 259 Score = 186 bits (473), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 100/243 (41%), Positives = 144/243 (59%), Gaps = 13/243 (5%) Query: 25 NLTRRFGGLVAVSDLNMEIRRQEILGLIGPNGAGKSTTFNLISGFFKPSSGRLYFDGKDM 84 N+TRRFGGLVAV+D++ ++R EI GLIGPNGAGK+T FNL++G PSSG L G+ + Sbjct: 16 NMTRRFGGLVAVNDVSFDVREGEIFGLIGPNGAGKTTLFNLMTGLTPPSSGTLTSRGQTV 75 Query: 85 TGKSALEISRAGLVRTFQHGSLMRSMSVYENILI------------GAIGALPRGTKKER 132 TG S ++ G+ RTFQ+ L R +S EN+ + G GA R +++ Sbjct: 76 TGLSPHRVAGLGISRTFQNIRLFRGLSALENVKVATHRQTHAGLWQGIFGA-DRAEERQV 134 Query: 133 AARVEETAEMLGLGPYLNEIAGTLPHGIQRLISIAIASAPRPKLLCLDEPLTGLNQTEVM 192 R E +++GL E+A +G QR + IA A A P++L LDEP G+N E Sbjct: 135 ERRAWELLDLVGLSDRAGELAANFSYGDQRKLEIARALATEPRILLLDEPAAGMNTAEKG 194 Query: 193 TTLGVFEKIRQVFGCTILLVEHNMKAVMQICDRIVVLHHGQLLATGTPDEIRHDDTVVSA 252 ++R F T+LL+EH++ VM +CDR+ VL+ G+L+A G P ++ D V+ A Sbjct: 195 QLTAFIREVRDRFDLTVLLIEHHVPLVMGLCDRVAVLNFGELIAIGDPASVQRDPKVIEA 254 Query: 253 YLG 255 YLG Sbjct: 255 YLG 257 >livG [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Eco Escherichia coli K12 Length = 255 Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 103/250 (41%), Positives = 145/250 (58%), Gaps = 13/250 (5%) Query: 20 LARVTNLTRRFGGLVAVSDLNMEIRRQEILGLIGPNGAGKSTTFNLISGFFKPSSGRLYF 79 L V L RFGGL+AV+++N+E+ QEI+ LIGPNGAGK+T FN ++GF+KP+ G + Sbjct: 5 LLSVNGLMMRFGGLLAVNNVNLELYPQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL 64 Query: 80 DGKDMTGKSALEISRAGLVRTFQHGSLMRSMSVYENILIGAIGALPRG------------ 127 + + G +I+R G+VRTFQH L R M+V EN+L+ L G Sbjct: 65 RDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPSFR 124 Query: 128 -TKKERAARVEETAEMLGLGPYLNEIAGTLPHGIQRLISIAIASAPRPKLLCLDEPLTGL 186 + E R E +GL + N A L +G QR + IA +P++L LDEP GL Sbjct: 125 RAQSEALDRAATWLERIGLLEHANRQASNLAYGDQRRLEIARCMVTQPEILMLDEPAAGL 184 Query: 187 NQTEVMTTLGVFEKIRQVFGCTILLVEHNMKAVMQICDRIVVLHHGQLLATGTPDEIRHD 246 N E + ++R TILL+EH+MK VM I DRI V++ G LA GTP++IR++ Sbjct: 185 NPKETKELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNN 244 Query: 247 DTVVSAYLGK 256 V+ AYLG+ Sbjct: 245 PDVIRAYLGE 254