BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0581.p (246 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0874_2 [E] COG4177 ABC-type branched-chain amino acid trans... 79 1e-14 RSp0015 [E] COG4177 ABC-type branched-chain amino acid transport... 79 1e-14 alr2538 [E] COG4177 ABC-type branched-chain amino acid transport... 77 5e-14 AF0824 [E] COG4177 ABC-type branched-chain amino acid transport ... 74 2e-13 YPO3806 [E] COG4177 ABC-type branched-chain amino acid transport... 73 5e-13 >BMEII0874_2 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Bme Brucella melitensis Length = 315 Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 21/221 (9%) Query: 2 IAALVSLVFGYVTLKTKGPYFLLIGFAFTEVMRILYARSDWLGGNSGMVGIFPPSG---- 57 IAALV +V Y + KGP++ L AF EV R+L WL G + + I G Sbjct: 82 IAALVGMVISYPCFRLKGPFYSLASIAFLEVFRVLALHFGWLTGGATGLMIQLKLGWVWM 141 Query: 58 -FGNYFP--LFAIGLCSVMILALYLIERSSFGKILIAIRDNDNVVLSVGINVHLSKVVCF 114 F +P L G+ V + + + RS G L+A R+ ++ + G+ +++ Sbjct: 142 VFRERWPSLLIVFGMLLVTLAITWAVRRSRLGFYLVATRERESAARAAGVRTVRVRLIAV 201 Query: 115 GIASFVAGIGGSLHGFTNNVISPGD-FGFLLSTFTLAYLKVGGENSPFGPLLGSIVLL-- 171 I+S + + G+ H I P F S + +GG + GPLLG+++L+ Sbjct: 202 AISSALCAMLGTFHAMYLTFIEPAAMFSLAFSIQIAMFALIGGLGTVAGPLLGAVLLVPI 261 Query: 172 ------ALGSVAMGMGAGEHIF-YGAAIVIAVLLFPNGLVG 205 +LG+ A+G+ H F YG +++ VL PNG++G Sbjct: 262 TEWARASLGASALGL----HGFVYGLVLILVVLFMPNGIMG 298 >RSp0015 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 299 Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 6/201 (2%) Query: 4 ALVSLVFGYVTLKTKGPYFLLIGFAFTEVMRILYARSD-WLGGNSGMVGIFPPSGFGNYF 62 A+V+++ G TL+ G Y + F EV+R+L ++ W GG G+ GI P + Sbjct: 75 AVVAVIIGRPTLRLSGVYLAMATLGFGEVVRVLILNTESWTGGALGLNGI--PQLTEWWH 132 Query: 63 PLFAIGLCSVMILALYLIERSSFGKILIAIRDNDNVVLSVGINVHLSKVVCFGIASFVAG 122 A+ L + L + RS G+ AI++++ +GINV +K++ F + + +AG Sbjct: 133 VALAVALT---LFVLARLRRSKVGRAFEAIKEDETAAGLMGINVAGTKLLAFVLGAMIAG 189 Query: 123 IGGSLHGFTNNVISPGDFGFLLSTFTLAYLKVGGENSPFGPLLGSIVLLALGSVAMGMGA 182 + G+L+ I P +FGF L +GG N GP+LGS++L L + Sbjct: 190 LAGALNAHLTFFIGPAEFGFDRGVEILTMAILGGTNGLTGPVLGSVILSLLPELLRAFKD 249 Query: 183 GEHIFYGAAIVIAVLLFPNGL 203 + G +++ VL P G+ Sbjct: 250 FRLVVNGLILMLIVLFLPKGI 270 >alr2538 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Nos Nostoc sp. PCC 7120 Length = 308 Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 16/229 (6%) Query: 1 VIAALVSLVFGYVTLKTKGPYFLLIGFAFTEVMRILYARSDWLGGNSGMVGIFPPSGFGN 60 V++ L+ + G L+ +G Y + AF EV+R+L D GG G+ GI P Sbjct: 78 VVSGLLGIAVGIPALRLRGIYLAIATIAFVEVLRVLSLNLDITGGAVGIFGIPQPFQTPI 137 Query: 61 YFPLFAIGLCSVMILALYLIERSSFGKILIAIRDNDNVVLSVGINVHLSKVVCFGIASFV 120 + + L + ++ Y +ER G+ AIR+++ ++GIN KV+ F + + + Sbjct: 138 EYLWITLPLLLISMVLFYRLERVRVGRAFTAIREDELAAGAMGINPTYYKVLAFTLGAML 197 Query: 121 AGIGGSLHGFTNNVISPGDFGFLLSTFTLAYLKVGGENSPFGPLLGSIVLLALGSVAMGM 180 AGI G + N + F S L ++ +GG + G ++G +V AL V G+ Sbjct: 198 AGIVGVISAHFLNTWNARQGTFDASIIYLTFVLIGGSRTFLGSVVGGMVFTALPEVLRGL 257 Query: 181 G--------------AGEHIFYGAAIVIAVLLFPNGLV--GIFSWGYKK 213 G I +G IV + FP GLV IF +G K Sbjct: 258 ADTGGFPTWLAQFLRDGRLIIFGLLIVTGTIFFPQGLVTPDIFKFGKPK 306 >AF0824 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Afu Archaeoglobus fulgidus Length = 323 Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 110/234 (47%), Gaps = 20/234 (8%) Query: 4 ALVSLVFGYVTLKTKGPYFLLIGFAFTEVMRILYARSDWLG-GNSGMVGIFPPS------ 56 A V+ + G +TL+ KG YF + F ++ + + D + G G+ GI PS Sbjct: 89 AFVAFLIGLMTLRLKGAYFAIATLLFNVIIYEVVDKWDEVTRGPRGLFGIPSPSIELSGI 148 Query: 57 -----GFGNYFPLFAIGLCSVMILALYLIERSSFGKILIAIRDNDNVVLSVGINVHLSKV 111 G N++ L + + VM L +LI RSSFG I++AIR+N+ + G+N+ KV Sbjct: 149 SISFSGTYNFYYLM-LAVLIVMTLLYWLIIRSSFGSIIVAIRENELLAEYAGVNLTKFKV 207 Query: 112 VCFGIASFVAGIGGSLHGFTNNVISPGDFGFLLSTFTLAYLKVGGENSPFGPLLGSIVLL 171 F +++ A + G+ + I P F+ S L + GG + GP +G+ V+ Sbjct: 208 ASFVLSAIFAAVAGAFYSAYIGSIFPDITSFVNSFAFLTAIIFGGAGTMLGPFIGTAVVT 267 Query: 172 ALGSVAMGMGAGEHIFYGAAIVIAVLLFPNGLVGIFSWGYKKLFSHAESKGGKV 225 + V + + G ++A+L P G++G + +S KG K+ Sbjct: 268 LINEVFFTLAQYTVLVQGIVFLLAILFMPKGVMGAY-------YSRKAEKGEKL 314 >YPO3806 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ype Yersinia pestis Length = 428 Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 32/255 (12%) Query: 1 VIAALVSLVFGYVTLKTKGPYFLLIGFAFTEVMRILYAR-SDWLGGNSGMVGIFPPSGFG 59 + AAL + G+ L+ +G Y ++ F E++RIL ++ GG +G+ I P+ FG Sbjct: 173 ITAALSGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFG 232 Query: 60 ---------------------NYFP------LFAIGLCSVMILALYLIER---SSFGKIL 89 Y P L+ + L V IL L++I R G+ Sbjct: 233 LEFSRTAKDGGWDTFHNFFGLTYDPSHRIIFLYLVALLLV-ILTLFVINRLLRMPLGRAW 291 Query: 90 IAIRDNDNVVLSVGINVHLSKVVCFGIASFVAGIGGSLHGFTNNVISPGDFGFLLSTFTL 149 A+R+++ S+G++ K+ F I++ AG G+L +SP F F+ S F L Sbjct: 292 EALREDEIACRSLGLSPTKIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFVESAFVL 351 Query: 150 AYLKVGGENSPFGPLLGSIVLLALGSVAMGMGAGEHIFYGAAIVIAVLLFPNGLVGIFSW 209 A + +GG S F +L +++L+ + + A + GA +V+ ++ P GL+ + Sbjct: 352 AIVVLGGMGSQFAVILAAVLLVVSRELMRDLNAYSMLLLGALMVLMMIWRPQGLLPMKRP 411 Query: 210 GYKKLFSHAESKGGK 224 K + ++K G+ Sbjct: 412 QLKLKVADVKAKQGE 426