BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0574.p         (95 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0020 [G] COG3622 Hydroxypyruvate isomerase Rso Ralstonia sola...   112   1e-25
PA0550 [G] COG3622 Hydroxypyruvate isomerase Pae Pseudomonas aer...    92   2e-19
PA1501 [G] COG3622 Hydroxypyruvate isomerase Pae Pseudomonas aer...    92   3e-19
mlr0252 Non COG                                                        92   4e-19
SMb20680 [G] COG3622 Hydroxypyruvate isomerase Sme Sinorhizobium...    89   3e-18

>RSc0020 [G] COG3622 Hydroxypyruvate isomerase Rso Ralstonia solanacearum
          Length = 262

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/66 (78%), Positives = 57/66 (86%)

Query: 1  MLRFAANLSMMYNEHAFLDRFAAAAKDGFSGVEFLFPYDFQPEEIRSRLDANGLTQALFN 60
          M RFAANL+MMY EHAFLDRF AAA+DGF GVEFLFPYD+   E+R+RLD NGL QALFN
Sbjct: 1  MPRFAANLTMMYPEHAFLDRFTAAARDGFEGVEFLFPYDYDKTELRTRLDDNGLAQALFN 60

Query: 61 APPGDW 66
          APPGDW
Sbjct: 61 APPGDW 66


>PA0550 [G] COG3622 Hydroxypyruvate isomerase Pae Pseudomonas aeruginosa
          Length = 265

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 52/66 (78%)

Query: 1  MLRFAANLSMMYNEHAFLDRFAAAAKDGFSGVEFLFPYDFQPEEIRSRLDANGLTQALFN 60
          M RFAANLSM+Y  H FL+RFAAAA DGF GVE+LFPY +   E+++RLD +GL Q LFN
Sbjct: 1  MPRFAANLSMLYPRHDFLERFAAAAADGFEGVEYLFPYAYPAAELKARLDDHGLRQVLFN 60

Query: 61 APPGDW 66
          A PGDW
Sbjct: 61 AAPGDW 66


>PA1501 [G] COG3622 Hydroxypyruvate isomerase Pae Pseudomonas aeruginosa
          Length = 260

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 52/66 (78%)

Query: 1  MLRFAANLSMMYNEHAFLDRFAAAAKDGFSGVEFLFPYDFQPEEIRSRLDANGLTQALFN 60
          M RF ANLSM++ E  FL+RF AAAK GF+GVE+LFPYD + E I++RL+ANGL Q LFN
Sbjct: 1  MPRFCANLSMLFTEVDFLERFDAAAKAGFAGVEYLFPYDVEAEAIKARLEANGLEQVLFN 60

Query: 61 APPGDW 66
           P GDW
Sbjct: 61 LPAGDW 66


>mlr0252 Non COG
          Length = 265

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 50/66 (75%)

Query: 1  MLRFAANLSMMYNEHAFLDRFAAAAKDGFSGVEFLFPYDFQPEEIRSRLDANGLTQALFN 60
          M RF+ANLSM++ EH FLDRF AAA+ GF GVE++ PYD  PE + +RL  NGLTQ LFN
Sbjct: 1  MPRFSANLSMLFAEHDFLDRFDAAARAGFKGVEYIGPYDHAPEVVAARLKKNGLTQVLFN 60

Query: 61 APPGDW 66
           P GDW
Sbjct: 61 LPAGDW 66


>SMb20680 [G] COG3622 Hydroxypyruvate isomerase Sme Sinorhizobium meliloti
          Length = 271

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 49/66 (74%)

Query: 1  MLRFAANLSMMYNEHAFLDRFAAAAKDGFSGVEFLFPYDFQPEEIRSRLDANGLTQALFN 60
          M RFAANL+M++NE  FLDRFA AA+ GF GVE+LFPY+F    +R  LD +GLTQ L N
Sbjct: 1  MPRFAANLTMLFNEAPFLDRFALAARAGFEGVEYLFPYEFDKTALRGELDRHGLTQVLHN 60

Query: 61 APPGDW 66
           P GDW
Sbjct: 61 LPAGDW 66