BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0557.p         (201 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2973 Non COG                                                        96   4e-20
XF0371 [NU] COG3167 Tfp pilus assembly protein PilO Xfa Xylella ...    69   6e-12
PA5042 [NU] COG3167 Tfp pilus assembly protein PilO Pae Pseudomo...    69   9e-12

>RSc2973 Non COG
          Length = 221

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 1/187 (0%)

Query: 6   LIVQWRELNGSHPSSWPRAWRNALLLMLFVAIVLTGWQLYLMPEIAALERSEHDYAAVKS 65
           L+ Q+R LN + P +W  A R   +++  V +V+ GWQ Y   ++   +    +   +KS
Sbjct: 14  LVGQFRGLNLNEPETWQLAPRILFMILAAVLVVVLGWQFYWSGKLDERDAKRTEQEQLKS 73

Query: 66  TYPEKHRRAMAFAHSARRIQDLEQRVKTLEQQLKTFIDVDLVLDGIGDAALQNRLQFEFA 125
            Y  K  + +      ++  ++E+RV  LE QL    ++D +L  +  A +   L F+  
Sbjct: 74  AYQSKLAQVVNLEALRKQKIEVERRVAKLELQLPNRTEMDALLADVNHAGIARGLTFDLF 133

Query: 126 RPGHTETKHGYVEAPIAIRLSGDYHDVVRFTADIAAMTHLVILGDMRVSSADRPGQVRLE 185
           RP     K  Y E P++++++G YHD+  F AD+AA++ +V L ++ + + ++ G + +E
Sbjct: 134 RPQSAVVKPYYAEIPVSVKVNGRYHDMALFAADVAALSRIVTLRNIAL-TGNKDGSMVME 192

Query: 186 AIALAYR 192
           A A AYR
Sbjct: 193 ARAEAYR 199


>XF0371 [NU] COG3167 Tfp pilus assembly protein PilO Xfa Xylella fastidiosa
           9a5c
          Length = 222

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 12  ELNGSHPSSWPRAWRNALLLMLFVAIVLTGWQLYLMPEIAALERSEHDYAAVKSTYPEKH 71
           +L+ ++  +WP+  +    +++   IV+  W L +  E+  L   E     ++S + ++ 
Sbjct: 10  DLDFNNIGAWPQKVKMVFCILVGFFIVIMAWFLAISGELEKLGVLEGKERELRSEFQKQQ 69

Query: 72  RRAMAFAHSARRIQDLEQRVKTLEQQLKTFIDV-DLVLDGIGDAALQNRLQFEFARPGHT 130
            RA+      +++  +E+ +K + +QL +  ++ DL++D I   AL + L  E  +PG  
Sbjct: 70  ERAVNLQPLKQQLVQMEEVLKQMLRQLPSKTEMPDLIVD-ISQTALSSGLVNELFQPGDE 128

Query: 131 ETKHGYVEAPIAIRLSGDYHDVVRFTADIAAMTHLVIL 168
             K  Y E PI++R+ G YH    F + +A++  +VIL
Sbjct: 129 VLKEFYAEKPISLRMVGSYHQFAAFVSGVASLPRVVIL 166


>PA5042 [NU] COG3167 Tfp pilus assembly protein PilO Pae Pseudomonas
           aeruginosa
          Length = 207

 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 92/188 (48%), Gaps = 4/188 (2%)

Query: 8   VQWRELNGSHPSSWPRAWRNALLLMLFVAIVLTGWQLYLMPEIAALERSEHDYAAVKSTY 67
           +   +L+ ++  SWP A +  + ++L  A++  G+  +L    A LE+   +   +K  +
Sbjct: 13  IDINDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLSDMQAQLEQQAAEEETLKQQF 72

Query: 68  PEKHRRAMAFAHSARRIQDLEQRVKTLEQQLKTFIDVDLVLDGIGDAALQNRLQFEFARP 127
             K  +A        +++++E+    L +QL +  +V  +L+ I    L + L+FE  + 
Sbjct: 73  STKAFQAANLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKL 132

Query: 128 GHTETKHGYVEAPIAIRLSGDYHDVVRFTADIAAMTHLVILGDMRVSSADRPG---QVRL 184
                +  Y+E PI I + G YHD+  F + ++++  +V L D  +     PG   ++R+
Sbjct: 133 LPEVAQQFYIELPIQISVVGGYHDLATFVSGVSSLPRIVTLHDFEIKPV-APGSTSKLRM 191

Query: 185 EAIALAYR 192
             +A  YR
Sbjct: 192 SILAKTYR 199