BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0548.p         (238 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0305 Non COG                                                        72   1e-12

>RSc0305 Non COG
          Length = 294

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 80/175 (45%), Gaps = 18/175 (10%)

Query: 17  MEFMRKMWGSMGTPA----------IGIPSLSVEEINKKISDLKTVASWLELNMNMLRAT 66
            EF+RK+WG                   P + +EEI+K+I DL+ V SWL+LN ++LR  
Sbjct: 13  FEFLRKLWGGGFAGMTGGGMPGMANFAAPPMDLEEIDKRIHDLRAVESWLQLNASLLRTA 72

Query: 67  IQTLEVQSATLTTLQAMGAILTAREGEGAAAAKTGSPFGFPAWPPQGKPAAEAAPAPAPE 126
           IQ LEVQ ATL  LQ  G+ L+      A    +GS             A        P 
Sbjct: 73  IQGLEVQRATLVALQTFGSALSPEAVRAAFDNFSGSEAP-----AAEAAAEPEPKPAWPH 127

Query: 127 SEPEVEPEKAPQTDAAAPAASEAKPDPAAPDFQASMA---NPTAWWNLLQEQFQQ 178
           +     P++      AA A + A+ +  A     + A   +P+ WWNLLQ+QF Q
Sbjct: 128 TSTAARPDRTEAEAPAARAEAAAQVEAQAQAAARAAAAALDPSPWWNLLQQQFNQ 182