BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0533.p (193 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0365 [O] COG3175 Cytochrome oxidase assembly factor Rso Ralst... 262 3e-70 PA0107 [O] COG3175 Cytochrome oxidase assembly factor Pae Pseudo... 151 8e-37 BMEI1463 [O] COG3175 Cytochrome oxidase assembly factor Bme Bruc... 124 2e-28 AGc1406 [O] COG3175 Cytochrome oxidase assembly factor Atu Agrob... 121 9e-28 SMc00012 [O] COG3175 Cytochrome oxidase assembly factor Sme Sino... 118 8e-27 >RSc0365 [O] COG3175 Cytochrome oxidase assembly factor Rso Ralstonia solanacearum Length = 202 Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 119/184 (64%), Positives = 147/184 (79%) Query: 3 PLMSDSDKNDASPERSLNRRMLGKLLVIAVLMFGFGYALIPVYKKICEVTGVNFLTPKDV 62 P D + + ER LNR MLGKL V+ V+MFGFGYA++P+YKKICE+T +N LT +D+ Sbjct: 5 PASPDPTDDARAAERGLNRAMLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDL 64 Query: 63 TVEAPSNSQIDKSRTVTIEFDGNSQGPWRFRPTVASMKVHPGEMTQVVYEVVNTQARSVD 122 A N+Q+D++RTVT+EFD NSQGP+RFRP SM+VHPGE+ Q+VYEVVN + RSV Sbjct: 65 DGGALRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVS 124 Query: 123 AQAIPSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPALPKDVTTITLSYTF 182 AQAIPSYAP+Q+ FFKK+ECFCF QQTL N++++MPVVF IDP LPKDV TITLSYTF Sbjct: 125 AQAIPSYAPKQATEFFKKIECFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTF 184 Query: 183 FEIG 186 FEIG Sbjct: 185 FEIG 188 >PA0107 [O] COG3175 Cytochrome oxidase assembly factor Pae Pseudomonas aeruginosa Length = 184 Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 73/168 (43%), Positives = 102/168 (60%), Gaps = 5/168 (2%) Query: 20 NRRMLGKLLVIAVLMFGFGYALIPVYKKICEVTGVNFLTPKDVTVEAPSNSQIDKSRTVT 79 RR++G+LL++ VLMF FG+AL+P+Y +C G+N K Q+D R V Sbjct: 8 TRRLVGRLLLVTVLMFAFGFALVPLYDVMCRALGIN---GKTAGSAYSGEQQVDVGREVK 64 Query: 80 IEF--DGNSQGPWRFRPTVASMKVHPGEMTQVVYEVVNTQARSVDAQAIPSYAPQQSAAF 137 ++F N W FR + VHPG + Q+V+ N + + AQAIPS AP ++AA+ Sbjct: 65 VQFMTSNNIDMVWEFRSAGDQLVVHPGAVNQMVFYARNPSDKPMTAQAIPSIAPAEAAAY 124 Query: 138 FKKVECFCFTQQTLGPNQAKQMPVVFYIDPALPKDVTTITLSYTFFEI 185 F K ECFCFTQQ L P ++ +MPV F +D LPKDV +TL+YT F+I Sbjct: 125 FHKTECFCFTQQVLQPGESIEMPVRFIVDRDLPKDVRHVTLAYTLFDI 172 >BMEI1463 [O] COG3175 Cytochrome oxidase assembly factor Bme Brucella melitensis Length = 237 Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/188 (39%), Positives = 103/188 (54%), Gaps = 13/188 (6%) Query: 5 MSDSDKNDASPERSLNRRMLGKLLVIAVLMFGFGYALIPVYKKICEVTGVNFLTPKDVTV 64 M+D +N+ RS N + L V M G YA +P+Y+ C+VTG T + V Sbjct: 37 MTDQGENEKKQRRS-NATIAVACLSFFVCMIGAAYASVPLYRIFCQVTGYGGTTQR---V 92 Query: 65 EAPSNSQIDKSRTVTIEFDGN-SQG-PWRFRPTVASMKVHPGEMTQVVYEVVNTQARSVD 122 E S++ +DK T+ + FD N + G PW F+P + V GE T + YE N Sbjct: 93 EQYSDTILDK--TIKVRFDANIANGLPWDFKPMQREVTVRIGETTMIKYEAHNLFGEETY 150 Query: 123 AQAIPSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPALP-----KDVTTIT 177 +A + AP ++ A+F KVECFCFT TL P + ++PVVF++DP KDV TIT Sbjct: 151 GRASFNVAPGRAGAYFNKVECFCFTDNTLKPGEDLELPVVFFVDPEFVNDPDLKDVKTIT 210 Query: 178 LSYTFFEI 185 LSYTFF I Sbjct: 211 LSYTFFPI 218 >AGc1406 [O] COG3175 Cytochrome oxidase assembly factor Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 205 Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 12/184 (6%) Query: 7 DSDKNDASPERSLNRRMLGKLLVIAVLMFGFGYALIPVYKKICEVTGVNFLTPKDVTVEA 66 +++ A +R NR +L LV M G YA +P+Y C VTG N T + VE Sbjct: 5 EAETARAGSQRVSNRSILVLCLVFFCAMIGMAYAAVPLYSLFCRVTGYNGTTQR---VEQ 61 Query: 67 PSNSQIDKSRTVTIEFDGNSQG--PWRFRPTVASMKVHPGEMTQVVYEVVNTQARSVDAQ 124 S+ +DK T+ + FD N+ W FRP +K GE +V ++ N + Sbjct: 62 YSDVILDK--TINVTFDANTSNGLNWDFRPVDKMVKPKIGETIKVTFKATNRSPVATTGT 119 Query: 125 AIPSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPALP-----KDVTTITLS 179 A+ + P ++ A+F KVECFCFT+ TL P + +MPVVF++DP + K V T+TLS Sbjct: 120 AVFNVTPMEAGAYFNKVECFCFTETTLQPGETLEMPVVFFVDPDIATARETKSVHTLTLS 179 Query: 180 YTFF 183 YTF+ Sbjct: 180 YTFY 183 >SMc00012 [O] COG3175 Cytochrome oxidase assembly factor Sme Sinorhizobium meliloti Length = 198 Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 10/184 (5%) Query: 5 MSDSDKNDASPERSLNRRMLGKLLVIAVLMFGFGYALIPVYKKICEVTGVNFLTPKDVTV 64 M+D+ + D ERS N ++G L M G YA +P+Y C VTG N T + V Sbjct: 1 MADNGQADRK-ERS-NGVIVGTCLAFVAGMIGMAYAAVPLYDMFCRVTGYNGTTQR---V 55 Query: 65 EAPSNSQIDKSRTVTIEFDGNSQGPWRFRPTVASMKVHPGEMTQVVYEVVNTQARSVDAQ 124 E S+ +D+ VT + + + PW F P + V GE Q++Y N + Q Sbjct: 56 EQASDLILDEKIKVTFDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQ 115 Query: 125 AIPSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPALPK-----DVTTITLS 179 A + P + A+F KV+CFCFT+ TL P + +MPVVF++DP + K + T+TLS Sbjct: 116 ATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPVETQGIKTLTLS 175 Query: 180 YTFF 183 YTF+ Sbjct: 176 YTFY 179