BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0522.p (198 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0373 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invo... 232 4e-61 CC3503 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invol... 139 5e-33 NMB1578 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invo... 137 2e-32 NMA1767 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invo... 137 2e-32 AGc3756 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invo... 131 7e-31 >RSc0373 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Rso Ralstonia solanacearum Length = 200 Score = 232 bits (592), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 112/175 (64%), Positives = 135/175 (77%), Gaps = 2/175 (1%) Query: 26 SAAEKFVNTDVTGLE-YAKDFALTDHNGKPRTLADFKGKAVVMFFGYTQCPDVCPTTMAE 84 S F N D+TG + + F+LTDH GK RTL DF+GK VVMFFGYT CPDVCPTT+AE Sbjct: 26 SDKPAFQNLDITGAKSFGAGFSLTDHTGKRRTLEDFRGKVVVMFFGYTHCPDVCPTTLAE 85 Query: 85 MANVMKELGPQADKVQVLFVTVDPARDTPQILSQYVPAFDKRFLGLY-GDEAATAKVAKE 143 + VM LG AD+VQVLFVTVDP RDT +L++YVPAFD RF+GL ++ KVAK+ Sbjct: 86 LRGVMDGLGKDADRVQVLFVTVDPQRDTQDLLAKYVPAFDPRFIGLRPANDQELQKVAKD 145 Query: 144 FKVFYQKVPGKTAGSYTMDHTAGSYVFDPQGHIRLFVRHGQGAEPIVHDLKLLLS 198 FKVFY KVPG T +YTMDHTAGSY+FDP+G++RLF++HGQG PIVHD+KLLL Sbjct: 146 FKVFYSKVPGSTPDNYTMDHTAGSYMFDPKGNLRLFIKHGQGPAPIVHDIKLLLD 200 >CC3503 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Ccr Caulobacter vibrioides Length = 190 Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 94/156 (60%), Gaps = 8/156 (5%) Query: 22 GCQQSAAEKFVNTDVTG--LEYAKDFALTDHNGKPRTLADFKGKAVVMFFGYTQCPDVCP 79 GC + AA+ D G ++ F LTD NGKP T GK +FFG+T CP+VCP Sbjct: 18 GCGEKAAQ-----DAAGAVIKIGGPFQLTDMNGKPVTEKSLLGKPTAVFFGFTYCPEVCP 72 Query: 80 TTMAEMANVMKELGPQADKVQVLFVTVDPARDTPQILSQYVPAFDKRFLGLYGDEAATAK 139 TT+ EM +K LG ADK+ V+ +TVDP RDTP L +Y+ FD R G G A AK Sbjct: 73 TTLTEMTAWLKALGKDADKLNVVLITVDPERDTPAQLKEYLSNFDPRIQGFTGTPDAIAK 132 Query: 140 VAKEFKVFYQKVPGKTAGSYTMDHTAGSYVFDPQGH 175 A+ ++V+YQKVP G YT+DH++ Y+FD +G Sbjct: 133 TARAYRVYYQKVP-LDGGGYTIDHSSAIYLFDAKGR 167 >NMB1578 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Nme Neisseria meningitidis MC58 Length = 217 Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 2/166 (1%) Query: 34 TDVTGLEYAKDFALTDHNGKPRTLADFKGKAVVMFFGYTQCPDVCPTTMAEMANVMKELG 93 TD+ + DF LTD GKP L+D KGK V++ FG+T CPDVCPT + ++ +K+LG Sbjct: 52 TDMRKEDIGGDFTLTDGEGKPFNLSDLKGKVVILSFGFTHCPDVCPTELLTYSDTLKQLG 111 Query: 94 PQADKVQVLFVTVDPARDTPQILSQYVPAFDKRFLGLYGDEAATAKVAK-EFKVFYQKVP 152 QA V+V+FV++DP RDTP+I+ +Y F+ F+GL V K +++V KV Sbjct: 112 GQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGGQNLPVIKQQYRVVSAKVN 171 Query: 153 GK-TAGSYTMDHTAGSYVFDPQGHIRLFVRHGQGAEPIVHDLKLLL 197 K + +Y +DH++G+Y+ D G + +F +G E I D++ LL Sbjct: 172 QKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL 217 >NMA1767 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems NmA Neisseria meningitidis Z2491 Length = 217 Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 4/167 (2%) Query: 34 TDVTGLEYAKDFALTDHNGKPRTLADFKGKAVVMFFGYTQCPDVCPTTMAEMANVMKELG 93 TD+ + DF LTD GKP L+D KGK V++ FG+T CPDVCPT + ++ +K+LG Sbjct: 52 TDMRKEDIGGDFTLTDGEGKPFNLSDLKGKVVILSFGFTHCPDVCPTELLTYSDTLKQLG 111 Query: 94 PQADKVQVLFVTVDPARDTPQILSQYVPAFDKRFLGL--YGDEAATAKVAKEFKVFYQKV 151 QA V+V+FV++DP RDTP+I+ +Y F+ F+GL GD+ + ++++V KV Sbjct: 112 GQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGDQNLPV-IKQQYRVVSAKV 170 Query: 152 PGK-TAGSYTMDHTAGSYVFDPQGHIRLFVRHGQGAEPIVHDLKLLL 197 K + +Y +DH++G+Y+ D G + +F +G E I D++ LL Sbjct: 171 NQKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL 217 >AGc3756 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 202 Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 3/160 (1%) Query: 41 YAKDFALTDHNGKPRTLADFKGKAVVMFFGYTQCPDVCPTTMAEMANVMKELGPQADKVQ 100 Y FALT NG+P T F+GK +FFG+T CP+VCPTT+ E+ M+++ P DK+Q Sbjct: 38 YGVPFALTAQNGQPITEKAFQGKPTALFFGFTHCPEVCPTTLFELNGWMEKVDPAGDKLQ 97 Query: 101 VLFVTVDPARDTPQILSQYVPAFDKRFLGLYGDEAATAKVAKEFKVFYQKVP---GKTAG 157 FV+VDP RDTP+I+ QYV KR G+ G A+ K ++++ +KVP G Sbjct: 98 AYFVSVDPERDTPEIMQQYVSNVSKRITGITGPADKIAETLKGYRIYAKKVPVDEKDPNG 157 Query: 158 SYTMDHTAGSYVFDPQGHIRLFVRHGQGAEPIVHDLKLLL 197 YTMDHTA + D G + +G+ + L+ LL Sbjct: 158 DYTMDHTASVILLDANGRFAGTIAYGENPDVAEQKLQNLL 197