BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0513.p         (115 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0386 [U] COG0552 Signal recognition particle GTPase Rso Ralst...    74   8e-14

>RSc0386 [U] COG0552 Signal recognition particle GTPase Rso Ralstonia
          solanacearum
          Length = 328

 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 7/77 (9%)

Query: 19 AAPPAASIPAPAATVPPTPEEIVEAAPPSAEAKRSWLARLKSGLSKTSSNLTTLFVGAKI 78
          AAP A  + A      PTP       P   +A++ W++RL+SGLSKTS +LTTLFVG K+
Sbjct: 6  AAPAALDMQADDIETVPTP-------PVVEQARKGWMSRLRSGLSKTSKSLTTLFVGVKV 58

Query: 79 GDELYEELESALLVSDA 95
           + L+EELE+ALL++DA
Sbjct: 59 DEALFEELETALLMADA 75