BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0506.p         (85 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0391 [C] COG1145 Ferredoxin Rso Ralstonia solanacearum             129   2e-30
PA0362 [C] COG1145 Ferredoxin Pae Pseudomonas aeruginosa              120   7e-28
NMA0150 [C] COG1145 Ferredoxin NmA Neisseria meningitidis Z2491       111   4e-25
NMB0123 [C] COG1145 Ferredoxin Nme Neisseria meningitidis MC58        110   1e-24
VC0716 [C] COG1145 Ferredoxin Vch Vibrio cholerae                     105   3e-23

>RSc0391 [C] COG1145 Ferredoxin Rso Ralstonia solanacearum
          Length = 82

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/82 (78%), Positives = 67/82 (81%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDHNKCTECVGHFDEPQCQQVCPVACIP 60
          MALMITD+CINCDVCEPECPN AI MGP+IY ID  KCTECVGHFD PQCQQVCPV CIP
Sbjct: 1  MALMITDECINCDVCEPECPNGAISMGPEIYVIDPGKCTECVGHFDAPQCQQVCPVECIP 60

Query: 61 FDPAWRESKEQLMLKYETLQAA 82
           DPA  E+ EQLM KY  L AA
Sbjct: 61 NDPAHAETPEQLMQKYLKLTAA 82


>PA0362 [C] COG1145 Ferredoxin Pae Pseudomonas aeruginosa
          Length = 83

 Score =  120 bits (301), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 64/83 (77%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDHNKCTECVGHFDEPQCQQVCPVACIP 60
          M+L ITDDCINCDVCEPECPN AI  G +IY ID N CTECVGH+DEPQCQQVCPV CIP
Sbjct: 1  MSLKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIP 60

Query: 61 FDPAWRESKEQLMLKYETLQAAA 83
           D A  ESK+QLM KY  +   A
Sbjct: 61 LDDANVESKDQLMEKYRKITGKA 83


>NMA0150 [C] COG1145 Ferredoxin NmA Neisseria meningitidis Z2491
          Length = 83

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 64/79 (81%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDHNKCTECVGHFDEPQCQQVCPVACIP 60
          M+L ITD+CINCDVCEPECPN+AI  G +IYEI+ N CT+CVGH+DEPQCQQVCPV CI 
Sbjct: 1  MSLFITDECINCDVCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDCIL 60

Query: 61 FDPAWRESKEQLMLKYETL 79
           D  + E+ ++LM KYE +
Sbjct: 61 IDEEYPETHDELMAKYEKI 79


>NMB0123 [C] COG1145 Ferredoxin Nme Neisseria meningitidis MC58
          Length = 83

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 63/79 (79%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDHNKCTECVGHFDEPQCQQVCPVACIP 60
          M+L ITD+CINCDVCEPECPN+AI  G +IYEI+ N CT+CVGH+DEPQCQQVCPV CI 
Sbjct: 1  MSLFITDECINCDVCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDCIL 60

Query: 61 FDPAWRESKEQLMLKYETL 79
           D    E+ ++LM KYE +
Sbjct: 61 IDEEHPETHDELMAKYEKI 79


>VC0716 [C] COG1145 Ferredoxin Vch Vibrio cholerae
          Length = 84

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDHNKCTECVGHFDEPQCQQVCPVA-CI 59
          MAL+IT  C NCD+CEPECPN AI MG +IYEI+ + CTEC GH+D+P CQ VCP++ CI
Sbjct: 1  MALLITAKCTNCDMCEPECPNSAISMGDKIYEINPDLCTECKGHYDKPTCQSVCPISNCI 60

Query: 60 PFDPAWRESKEQLMLKYETLQAAA 83
            DPA RE++EQL+ K+  +Q  A
Sbjct: 61 ITDPAHRETEEQLLEKFVVIQGLA 84