BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0502.p         (304 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1395 [GER] COG0697 Permeases of the drug/metabolite transport...   116   7e-26

>RSc1395 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Rso Ralstonia solanacearum
          Length = 306

 Score =  116 bits (290), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 142/273 (52%), Gaps = 7/273 (2%)

Query: 23  LLVNTTIWGLSWIAFKSLQQQGIHPLWATAIIFSCCTIWMLLLKRKSLREIGKHPELVYV 82
           +LV  ++WG+SW  ++ L   G+  L A+A+  +  TI   +  R+          +  +
Sbjct: 24  ILVGASVWGISWYPYRLLAGWGLGSLLASAMTGAAATIVAAVALRRHFHTFRWSWLIPAL 83

Query: 83  AIASGLTNTAFNGAVAFGDVVRVVLLFYLMPIWAVILARLVLHEPITQRALLRIALGLTG 142
            + +G+TN  F  +   G V+RV+LLFYL P+W  +LARL LHE +  R    + + L G
Sbjct: 84  GLVAGVTNAGFVWSTVHGTVMRVLLLFYLTPLWTALLARLWLHERLGARGAALLVVALCG 143

Query: 143 AVIVLYQPAIGVSLPHDLADWVALAGGFFFAVNNIMLR----RLHGVADGARAVAMLSGG 198
           A ++L     G+  P   A+W  +  G  FA NN++ R    RL  +    R V + +G 
Sbjct: 144 AGLMLGAGNAGMPWPGTAAEWSGVVAGLAFACNNVLARLVGQRLPTMRAELRTVVVFAGS 203

Query: 199 ALLSIILGAALAASGLIAWPGAIGALSVPTL-ALWSVLFMVSNLCLQYGVARLPANITAV 257
           AL+   L AA+   G+ A P A+    V  L    + + +  N  +Q G+ RLPAN  A+
Sbjct: 204 ALVG--LPAAIWLDGVQAVPDALATADVWLLVGGMAAVLVAGNTLVQRGLQRLPANRAAL 261

Query: 258 VMLVEIIIASVSAWLFGAAELRVQDLIGGALII 290
           +ML EI++A+ S+    A  L  Q++ GGA II
Sbjct: 262 LMLFEIVVAAASSAWLTAERLSAQEMAGGACII 294