BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0499.p (363 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2898 [J] COG0012 Predicted GTPase, probable translation facto... 583 e-166 NMB1838 [J] COG0012 Predicted GTPase, probable translation facto... 555 e-158 NMA0618 [J] COG0012 Predicted GTPase, probable translation facto... 555 e-158 ychF [J] COG0012 Predicted GTPase, probable translation factor E... 533 e-151 ECs1708 [J] COG0012 Predicted GTPase, probable translation facto... 533 e-151 >RSc2898 [J] COG0012 Predicted GTPase, probable translation factor Rso Ralstonia solanacearum Length = 364 Score = 583 bits (1503), Expect = e-166, Method: Compositional matrix adjust. Identities = 283/364 (77%), Positives = 320/364 (87%), Gaps = 1/364 (0%) Query: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIPAENYPFCTIEPNVGMVEVPDPRLQALAEIVKP 60 MSL+CGIVGLPNVGKSTLFNALTKAGI AENYPFCTIEPNVG+VEVPD RL ALA+IVKP Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGVVEVPDQRLSALADIVKP 60 Query: 61 ERILSATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGKVS 120 ER+L A VEFVDIAGLVAGASKGEGLGNQFL++IRETDAI +VVRCFED NV+HVAGKV Sbjct: 61 ERVLPAVVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDENVVHVAGKVD 120 Query: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSG-DKDAAKLVALLERIMPALDDAQPVR 179 P+ DI VI TELALAD+ TVEKA+ R K A+SG DK+AAKLVA+LE+ LD+A+ VR Sbjct: 121 PIADIEVINTELALADLATVEKALARYSKAAKSGNDKEAAKLVAVLEKARSVLDEAKAVR 180 Query: 180 ALGLDAEEMALIKPLCLITAKPAMYVANVSDTGFTDNPLLDLLTKYAAEQGAPIVAICAS 239 L L EE AL+KPLCLITAKP MYVANV D GF +NP LD + YAA+ G+P+VA+CA+ Sbjct: 181 TLSLSDEEWALLKPLCLITAKPTMYVANVKDDGFENNPHLDAVRAYAAQTGSPVVAVCAA 240 Query: 240 IESEIADLDDADKAEFLADMGMEEPGLDRLIRAAFKLLGLQTYFTAGVKEVRAWTVPVGA 299 IE+EIADLDDADK EFLADMGM+EPGL+R+IRAAFKLLGLQTYFTAGVKEVRAWT+ +G Sbjct: 241 IEAEIADLDDADKTEFLADMGMDEPGLNRVIRAAFKLLGLQTYFTAGVKEVRAWTIHIGD 300 Query: 300 TGPQAAGVIHTDFERGFIRAQTIAYEDFIAYKGENGAKEAGKMRAEGKEYVVRDGDVMNF 359 T P+AA IHTDFERGFIRAQTIAY+DFI YKGE GAKEAGKMRAEGKEY+V+DGDV++F Sbjct: 301 TAPRAAAAIHTDFERGFIRAQTIAYDDFIQYKGEQGAKEAGKMRAEGKEYIVKDGDVLHF 360 Query: 360 LFNV 363 LFNV Sbjct: 361 LFNV 364 >NMB1838 [J] COG0012 Predicted GTPase, probable translation factor Nme Neisseria meningitidis MC58 Length = 363 Score = 555 bits (1430), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/363 (73%), Positives = 318/363 (87%) Query: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIPAENYPFCTIEPNVGMVEVPDPRLQALAEIVKP 60 MSLKCGIVGLPNVGKSTLFNALT++GI A NYPFCTIEPNVG+VEVPDPR+ LA+IV P Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIVEVPDPRMAELAKIVNP 60 Query: 61 ERILSATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGKVS 120 +++ A VEFVDIAGLVAGASKGEGLGNQFL++IRETDAIVNVVRCF+D N++HVAG+V Sbjct: 61 QKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRVD 120 Query: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDDAQPVRA 180 P+ DI I TELALAD+ +VEKAI RE+K+ARSGDKDA KLV L ++++P LD+ +PVR+ Sbjct: 121 PIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVDLCKKLLPHLDEGKPVRS 180 Query: 181 LGLDAEEMALIKPLCLITAKPAMYVANVSDTGFTDNPLLDLLTKYAAEQGAPIVAICASI 240 GLDAEE A++KPL L+TAKPAMYV NV++ GF +NP LD L + AA++ AP+VA+CA++ Sbjct: 181 FGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFENNPHLDRLKELAAKENAPVVAVCAAM 240 Query: 241 ESEIADLDDADKAEFLADMGMEEPGLDRLIRAAFKLLGLQTYFTAGVKEVRAWTVPVGAT 300 ESEIA+L+D +KAEFLA+MG+EEPGL+RLIRA + LLGLQTYFTAGVKEVRAWT+ G T Sbjct: 241 ESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRAWTIHKGDT 300 Query: 301 GPQAAGVIHTDFERGFIRAQTIAYEDFIAYKGENGAKEAGKMRAEGKEYVVRDGDVMNFL 360 PQAAGVIHTDFERGFIRAQ I+Y+DF++ GE AKEAGKMR EGKEYVV+DGDVM+FL Sbjct: 301 APQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVVQDGDVMHFL 360 Query: 361 FNV 363 FNV Sbjct: 361 FNV 363 >NMA0618 [J] COG0012 Predicted GTPase, probable translation factor NmA Neisseria meningitidis Z2491 Length = 363 Score = 555 bits (1430), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/363 (73%), Positives = 318/363 (87%) Query: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIPAENYPFCTIEPNVGMVEVPDPRLQALAEIVKP 60 MSLKCGIVGLPNVGKSTLFNALT++GI A NYPFCTIEPNVG+VEVPDPR+ LA+IV P Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIVEVPDPRMAELAKIVNP 60 Query: 61 ERILSATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGKVS 120 +++ A VEFVDIAGLVAGASKGEGLGNQFL++IRETDAIVNVVRCF+D N++HVAG+V Sbjct: 61 QKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRVD 120 Query: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDDAQPVRA 180 P+ DI I TELALAD+ +VEKAI RE+K+ARSGDKDA KLV L ++++P LD+ +PVR+ Sbjct: 121 PIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVDLCKKLLPHLDEGKPVRS 180 Query: 181 LGLDAEEMALIKPLCLITAKPAMYVANVSDTGFTDNPLLDLLTKYAAEQGAPIVAICASI 240 GLDAEE A++KPL L+TAKPAMYV NV++ GF +NP LD L + AA++ AP+VA+CA++ Sbjct: 181 FGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFENNPHLDRLKELAAKENAPVVAVCAAM 240 Query: 241 ESEIADLDDADKAEFLADMGMEEPGLDRLIRAAFKLLGLQTYFTAGVKEVRAWTVPVGAT 300 ESEIA+L+D +KAEFLA+MG+EEPGL+RLIRA + LLGLQTYFTAGVKEVRAWT+ G T Sbjct: 241 ESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRAWTIHKGDT 300 Query: 301 GPQAAGVIHTDFERGFIRAQTIAYEDFIAYKGENGAKEAGKMRAEGKEYVVRDGDVMNFL 360 PQAAGVIHTDFERGFIRAQ I+Y+DF++ GE AKEAGKMR EGKEYVV+DGDVM+FL Sbjct: 301 APQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVVQDGDVMHFL 360 Query: 361 FNV 363 FNV Sbjct: 361 FNV 363 >ychF [J] COG0012 Predicted GTPase, probable translation factor Eco Escherichia coli K12 Length = 363 Score = 533 bits (1374), Expect = e-151, Method: Compositional matrix adjust. Identities = 252/363 (69%), Positives = 309/363 (85%) Query: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIPAENYPFCTIEPNVGMVEVPDPRLQALAEIVKP 60 M KCGIVGLPNVGKSTLFNALTKAGI A N+PFCTIEPN G+V +PDPRL LAEIVKP Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKP 60 Query: 61 ERILSATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGKVS 120 +R L T+EFVDIAGLV GASKGEGLGNQFL++IRET+AI +VVRCFE+ N+IHV+GKV+ Sbjct: 61 QRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVN 120 Query: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDDAQPVRA 180 P DDI VI TELALAD+ T E+AIHR QKKA+ GDKDA +A+LE+ +P L++A +RA Sbjct: 121 PADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAELAVLEKCLPQLENAGMLRA 180 Query: 181 LGLDAEEMALIKPLCLITAKPAMYVANVSDTGFTDNPLLDLLTKYAAEQGAPIVAICASI 240 L L AEE A I+ L +T KP MY+ANV++ GF +NP LD + + AA++G+ +V +CA++ Sbjct: 181 LDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV 240 Query: 241 ESEIADLDDADKAEFLADMGMEEPGLDRLIRAAFKLLGLQTYFTAGVKEVRAWTVPVGAT 300 E++IA+LDD ++ EF+ ++G+EEPGL+R+IRA +KLL LQTYFTAGVKEVRAWT+PVGAT Sbjct: 241 EADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGAT 300 Query: 301 GPQAAGVIHTDFERGFIRAQTIAYEDFIAYKGENGAKEAGKMRAEGKEYVVRDGDVMNFL 360 PQAAG IHTDFE+GFIRAQTI++EDFI YKGE GAKEAGKMRAEGK+Y+V+DGDVMNFL Sbjct: 301 APQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFL 360 Query: 361 FNV 363 FNV Sbjct: 361 FNV 363 >ECs1708 [J] COG0012 Predicted GTPase, probable translation factor Ecs Escherichia coli O157:H7 Length = 363 Score = 533 bits (1374), Expect = e-151, Method: Compositional matrix adjust. Identities = 252/363 (69%), Positives = 309/363 (85%) Query: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIPAENYPFCTIEPNVGMVEVPDPRLQALAEIVKP 60 M KCGIVGLPNVGKSTLFNALTKAGI A N+PFCTIEPN G+V +PDPRL LAEIVKP Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKP 60 Query: 61 ERILSATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGKVS 120 +R L T+EFVDIAGLV GASKGEGLGNQFL++IRET+AI +VVRCFE+ N+IHV+GKV+ Sbjct: 61 QRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVN 120 Query: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDDAQPVRA 180 P DDI VI TELALAD+ T E+AIHR QKKA+ GDKDA +A+LE+ +P L++A +RA Sbjct: 121 PADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAELAVLEKCLPQLENAGMLRA 180 Query: 181 LGLDAEEMALIKPLCLITAKPAMYVANVSDTGFTDNPLLDLLTKYAAEQGAPIVAICASI 240 L L AEE A I+ L +T KP MY+ANV++ GF +NP LD + + AA++G+ +V +CA++ Sbjct: 181 LDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV 240 Query: 241 ESEIADLDDADKAEFLADMGMEEPGLDRLIRAAFKLLGLQTYFTAGVKEVRAWTVPVGAT 300 E++IA+LDD ++ EF+ ++G+EEPGL+R+IRA +KLL LQTYFTAGVKEVRAWT+PVGAT Sbjct: 241 EADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGAT 300 Query: 301 GPQAAGVIHTDFERGFIRAQTIAYEDFIAYKGENGAKEAGKMRAEGKEYVVRDGDVMNFL 360 PQAAG IHTDFE+GFIRAQTI++EDFI YKGE GAKEAGKMRAEGK+Y+V+DGDVMNFL Sbjct: 301 APQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFL 360 Query: 361 FNV 363 FNV Sbjct: 361 FNV 363