BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0498.p (243 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2962 [Q] COG1127 ABC-type transport system involved in resist... 357 2e-98 PA4456 [Q] COG1127 ABC-type transport system involved in resista... 301 6e-82 VC2520 [Q] COG1127 ABC-type transport system involved in resista... 292 4e-79 NMB1966 [Q] COG1127 ABC-type transport system involved in resist... 291 1e-78 NMA0485 [Q] COG1127 ABC-type transport system involved in resist... 290 3e-78 >RSc2962 [Q] COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component Rso Ralstonia solanacearum Length = 279 Score = 357 bits (915), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 172/243 (70%), Positives = 205/243 (84%) Query: 1 MDFPRGKVIAVMGGSGSGKTTILRLIGGQLRPQSGTLTVDGENVPSLDTRDLYRLRRKMG 60 M P+G V+AVMGGSG GKTT+LRLIGGQ+ SG + V G ++ ++D LY RR+MG Sbjct: 32 MRVPKGSVVAVMGGSGCGKTTVLRLIGGQVAAASGAVRVHGADIGAMDKPALYAARRQMG 91 Query: 61 MLFQNGALFTDMTVFDNVAFPLHEHTDLPEELIRDLVLLKLNAVGLRNAASLKPAEISGG 120 MLFQ GALF+DM+VFDNVAFPL EHT+LP+ LIRDLVL+KLNAVGLR A L P++ISGG Sbjct: 92 MLFQFGALFSDMSVFDNVAFPLREHTELPDLLIRDLVLMKLNAVGLRGARDLMPSQISGG 151 Query: 121 MARRVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRKLNDALGSTSILVSHDVNES 180 MARRVALARAIALDP+LI+YDEPFAGLDPIS+G+TA+LIR LNDALG+TSI+VSHDV E+ Sbjct: 152 MARRVALARAIALDPSLILYDEPFAGLDPISLGLTASLIRSLNDALGATSIIVSHDVQET 211 Query: 181 FGIADYVYFLSAGKIVAQGTPDEMRASQDPYVKQFVHAEADGPVPFHYPGRSLAEDVGLG 240 F IADYVYF++ G I A+GTP E+ AS DP+V+QFVH E DGPVPFHYPG LAED G+G Sbjct: 212 FQIADYVYFVANGGIAAEGTPAELSASTDPFVRQFVHGEPDGPVPFHYPGVPLAEDFGVG 271 Query: 241 GRQ 243 GR+ Sbjct: 272 GRR 274 >PA4456 [Q] COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component Pae Pseudomonas aeruginosa Length = 269 Score = 301 bits (772), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 145/240 (60%), Positives = 181/240 (75%), Gaps = 1/240 (0%) Query: 3 FPRGKVIAVMGGSGSGKTTILRLIGGQLRPQSGTLTVDGENVPSLDTRDLYRLRRKMGML 62 PRGKV +MG SG GKTT+LRLI QLRP G + V+G+N+P L DL+ +R++ G+L Sbjct: 31 IPRGKVTGIMGPSGCGKTTLLRLIASQLRPSKGEVWVNGQNLPQLSRGDLFDMRKQFGVL 90 Query: 63 FQNGALFTDMTVFDNVAFPLHEHTDLPEELIRDLVLLKLNAVGLRNAASLKPAEISGGMA 122 FQ+GALFTD+ VF+NVAFPL HT LPEE+IRD+VL+KL AVGLR A L P E+SGGM Sbjct: 91 FQSGALFTDLDVFENVAFPLRVHTQLPEEMIRDIVLMKLQAVGLRGAVELMPDELSGGMK 150 Query: 123 RRVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRKLNDALGSTSILVSHDVNESFG 182 RRVALARAIALDP +++YDEPF G DPI+MGV LIR LNDALG TSI+VSHD+ E+ Sbjct: 151 RRVALARAIALDPQILLYDEPFVGQDPIAMGVLVRLIRLLNDALGITSIVVSHDLAETAS 210 Query: 183 IADYVYFLSAGKIVAQGTPDEMRASQDPYVKQFVHAEADGPVPFHYPGRSLAEDVGLGGR 242 IADY+Y + G+++ GTPD ++ + DP ++QFV DGPVPFHYP R D+ LG R Sbjct: 211 IADYIYIVGDGRVLGHGTPDVLKETDDPRIRQFVKGIPDGPVPFHYPARDYRADL-LGER 269 >VC2520 [Q] COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component Vch Vibrio cholerae Length = 267 Score = 292 bits (748), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 150/234 (64%), Positives = 185/234 (79%) Query: 4 PRGKVIAVMGGSGSGKTTILRLIGGQLRPQSGTLTVDGENVPSLDTRDLYRLRRKMGMLF 63 P+GKV A+MG SG GKTT+LRLIGGQL P+ G + DGEN+P+L R LYR R+KM MLF Sbjct: 30 PKGKVTAIMGPSGIGKTTLLRLIGGQLLPEQGEIWFDGENIPTLSRRKLYRARKKMSMLF 89 Query: 64 QNGALFTDMTVFDNVAFPLHEHTDLPEELIRDLVLLKLNAVGLRNAASLKPAEISGGMAR 123 Q+GALFTD+ VFDNVA+PL EHT+L E +I+ LVLLKL AVGLR AA L P+E+SGGMAR Sbjct: 90 QSGALFTDLNVFDNVAYPLREHTELDEAMIKTLVLLKLEAVGLRGAAYLMPSELSGGMAR 149 Query: 124 RVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRKLNDALGSTSILVSHDVNESFGI 183 R ALARAIALDP LIMYDEPF G DPI+MGV LIR LN ALG TS++VSHDV E I Sbjct: 150 RAALARAIALDPELIMYDEPFVGQDPITMGVLVELIRNLNRALGVTSVVVSHDVPEVMSI 209 Query: 184 ADYVYFLSAGKIVAQGTPDEMRASQDPYVKQFVHAEADGPVPFHYPGRSLAEDV 237 AD+VY L+ GK++AQG+P +R + DP V+QF+ +ADGPVPF +P + + +++ Sbjct: 210 ADWVYLLADGKVIAQGSPQALRDNPDPRVQQFLCGDADGPVPFRFPAQPIEQEL 263 >NMB1966 [Q] COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component Nme Neisseria meningitidis MC58 Length = 266 Score = 291 bits (744), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 140/235 (59%), Positives = 183/235 (77%), Gaps = 1/235 (0%) Query: 4 PRGKVIAVMGGSGSGKTTILRLIGGQLRPQSGTLTVDGENVPSLDTRDLYRLRRKMGMLF 63 P+G AVMGGSGSGKTT++RLI GQ+RPQSG + ++G ++ +LY RR+MG+LF Sbjct: 30 PQGNFAAVMGGSGSGKTTLMRLITGQIRPQSGQVLIEGRDLAGFSADELYEHRRRMGVLF 89 Query: 64 QNGALFTDMTVFDNVAFPLHEHTDLPEELIRDLVLLKLNAVGLRNAASLKPAEISGGMAR 123 Q+GALFTD++VFDN+AFP+ E T LPE +IRDLVLLKLNAVGLR +L P+E+SGGM+R Sbjct: 90 QHGALFTDLSVFDNIAFPMRELTRLPEAVIRDLVLLKLNAVGLRGVENLMPSELSGGMSR 149 Query: 124 RVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRKLNDALGSTSILVSHDVNESFGI 183 RVALAR IALDP +++YDEPF GLDPIS+GV A+LI ++N AL STSI+V+HD+ +S I Sbjct: 150 RVALARTIALDPEIMLYDEPFTGLDPISLGVIAHLISRVNKALRSTSIMVTHDIEKSLEI 209 Query: 184 ADYVYFLSAGKIVAQGTPDEMRASQDPYVKQFVHAEADGPVPFHYPGR-SLAEDV 237 D V FL+ G+I+ G+P EMR P+V+QFV ADGPV + YP + SL +D+ Sbjct: 210 VDQVIFLAHGEIMFSGSPQEMRELDSPWVRQFVGGLADGPVAYRYPAQTSLQQDL 264 >NMA0485 [Q] COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component NmA Neisseria meningitidis Z2491 Length = 286 Score = 290 bits (741), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 139/235 (59%), Positives = 183/235 (77%), Gaps = 1/235 (0%) Query: 4 PRGKVIAVMGGSGSGKTTILRLIGGQLRPQSGTLTVDGENVPSLDTRDLYRLRRKMGMLF 63 P+G AVMGGSGSGKTT++RLI GQ+RPQSG + ++G ++ +LY RR+MG+LF Sbjct: 50 PQGNFAAVMGGSGSGKTTLMRLITGQIRPQSGKVLIEGRDLAGFSADELYEHRRRMGVLF 109 Query: 64 QNGALFTDMTVFDNVAFPLHEHTDLPEELIRDLVLLKLNAVGLRNAASLKPAEISGGMAR 123 Q+GALFTD++VFDN+AFP+ E T LPE +IRDLVLLKLNAVGLR +L P+E+SGGM+R Sbjct: 110 QHGALFTDLSVFDNIAFPMRELTRLPEAVIRDLVLLKLNAVGLRGVENLMPSELSGGMSR 169 Query: 124 RVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRKLNDALGSTSILVSHDVNESFGI 183 RVALAR IALDP +++YDEPF GLDPIS+GV A+LI ++N AL STS++V+HD+ +S I Sbjct: 170 RVALARTIALDPEIMLYDEPFTGLDPISLGVIAHLISRVNKALRSTSVMVTHDIEKSLEI 229 Query: 184 ADYVYFLSAGKIVAQGTPDEMRASQDPYVKQFVHAEADGPVPFHYPGR-SLAEDV 237 D V FL+ G+I+ G+P EMR P+V+QFV ADGPV + YP + SL +D+ Sbjct: 230 VDQVIFLAHGEIMFSGSPQEMRELDSPWVRQFVGGLADGPVAYRYPAQTSLQQDL 284