BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0495.p (236 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2959 [M] COG2853 Surface lipoprotein Rso Ralstonia solanacearum 203 2e-52 PA2800 [M] COG2853 Surface lipoprotein Pae Pseudomonas aeruginosa 199 4e-51 NMB1961 [M] COG2853 Surface lipoprotein Nme Neisseria meningitid... 147 2e-35 NMA0490 [M] COG2853 Surface lipoprotein NmA Neisseria meningitid... 147 2e-35 XF0416 [M] COG2853 Surface lipoprotein Xfa Xylella fastidiosa 9a5c 146 5e-35 >RSc2959 [M] COG2853 Surface lipoprotein Rso Ralstonia solanacearum Length = 269 Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/220 (49%), Positives = 144/220 (65%), Gaps = 5/220 (2%) Query: 6 RIAALAMVAA---LSGCAT--SQNPNDPLEGFNRAMFSFNDTVDKVALKPAAQAYQFVLP 60 R AL M A+ L+GCAT + NP DP+E FNR +F ND +DK LKP AQ Y V+P Sbjct: 11 RGLALGMAASAVLLAGCATGPNANPADPIEPFNREVFRINDDLDKGVLKPVAQTYVDVVP 70 Query: 61 NFVQTGIGNFFGNIGDLWSAVNQVLQGRIETGVTSFMRVAVNTTFGLVGVLDVSTEARLP 120 + +T + NFF N GD++SAVN +LQ + + MRVA+NT GL G++D++++A LP Sbjct: 71 SPARTAVSNFFSNAGDVYSAVNNLLQLKGTAALEDTMRVAINTVLGLGGLIDIASDAGLP 130 Query: 121 KQKSDFGQTLGKWGVGSGPYVVLPLLGPSTIRDTAALPADFYGDLWSYKKPVRWRNVGSV 180 K K DFGQTLG WGV +G Y+V PLLGPST+RDTA D+ D +Y + Sbjct: 131 KHKEDFGQTLGVWGVPAGAYIVWPLLGPSTVRDTAGFLVDWQLDPLTYFNNSAVTYSLAA 190 Query: 181 VRVIDKRAQLLDASNLLEDAALDKYDFVRDTYLQSRQSQI 220 +RV+D RA LL N+LE+AA+DKY F+RD YLQ R+ I Sbjct: 191 LRVVDARAGLLGVGNVLEEAAVDKYTFMRDAYLQRRRYLI 230 >PA2800 [M] COG2853 Surface lipoprotein Pae Pseudomonas aeruginosa Length = 234 Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 105/225 (46%), Positives = 140/225 (62%), Gaps = 5/225 (2%) Query: 4 AARIAALAMVAALSGCATSQNPNDPLEGFNRAMFSFNDTVDKVALKPAAQAYQFVLPNFV 63 +ARI A A +A + + + DP E NR +F+FNDT+D ALKP AQ YQ V PNFV Sbjct: 12 SARILACASLALAPTLSLAASEEDPWESINRPIFTFNDTLDTYALKPLAQGYQKVTPNFV 71 Query: 64 QTGIGNFFGNIGDLWSAVNQVLQGRIETGVTSFMRVAVNTTFGLVGVLDVSTEARLPKQK 123 Q G+ NFF N+GD+ + N +LQ + R+ N+TFGL G++DV+T L + Sbjct: 72 QDGVHNFFNNLGDVKNLANNLLQAKFHNAGVDTSRLLFNSTFGLAGLIDVATPMGLQRND 131 Query: 124 SDFGQTLGKWGVGSGPYVVLPLLGPSTIRDTAALPADFYGDLWSYKKPVRWRNVGSVVRV 183 DFGQTLG WGVGSGPYV+LP LGPST+RD A D Y + Y VR RNV + Sbjct: 132 EDFGQTLGYWGVGSGPYVMLPFLGPSTLRDAPAKIPDIYVSPYHYMDDVRARNVMFGINT 191 Query: 184 IDKRAQLLDASNLLEDAALDKYDFVRDTYLQSRQSQI-DG-IKDD 226 +D RA LL + L+ DKY F+R+ YLQ+R+ ++ DG ++DD Sbjct: 192 VDTRANLLKSEKLISG---DKYIFIRNAYLQNREFKVKDGEVEDD 233 >NMB1961 [M] COG2853 Surface lipoprotein Nme Neisseria meningitidis MC58 Length = 275 Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/198 (38%), Positives = 115/198 (58%), Gaps = 5/198 (2%) Query: 25 PNDPLEGFNRAMFSFNDTVDKVALKPAAQAYQFVLPNFVQTGIGNFFGNIGDLWSAVNQV 84 P DP EG+NRA+F FND D+ PAA+ Y+ V P V+ G+ NFF N+ D+ S + + Sbjct: 25 PADPYEGYNRAVFKFNDQADRYIFAPAARGYRKVAPKPVRAGVSNFFNNLCDVVSFGSNI 84 Query: 85 LQGRIETGVTSFMRVAVNTTFGLVGVLDVSTEARLPKQKSDFGQTLGKWGVGSGPYVVLP 144 L+ I+ +RV +NTTFGL G++D++ +P K+ G T WG + Y VLP Sbjct: 85 LRLDIKRASEDLVRVGINTTFGLGGLIDIAGAGGIPDNKNTLGDTFASWGWKNSNYFVLP 144 Query: 145 LLGPSTIRDT--AALPADFYGDLWSYKKPV-RWRNVGSVVRVIDKRAQLLDASNLLEDAA 201 +LGPST+RD + + + ++ PV RW + V + R LLD ++ L++AA Sbjct: 145 VLGPSTVRDALGTGITSVYSPKNIVFRTPVGRWGT--TAVSAVSTREGLLDLTDSLDEAA 202 Query: 202 LDKYDFVRDTYLQSRQSQ 219 +DKY + RD Y++ R Q Sbjct: 203 IDKYSYTRDLYMKVRARQ 220 >NMA0490 [M] COG2853 Surface lipoprotein NmA Neisseria meningitidis Z2491 Length = 279 Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/198 (38%), Positives = 115/198 (58%), Gaps = 5/198 (2%) Query: 25 PNDPLEGFNRAMFSFNDTVDKVALKPAAQAYQFVLPNFVQTGIGNFFGNIGDLWSAVNQV 84 P DP EG+NRA+F FND D+ PAA+ Y+ V P V+ G+ NFF N+ D+ S + + Sbjct: 25 PADPYEGYNRAVFKFNDQADRYIFAPAARGYRKVAPKPVRAGVSNFFNNLCDVVSFGSNI 84 Query: 85 LQGRIETGVTSFMRVAVNTTFGLVGVLDVSTEARLPKQKSDFGQTLGKWGVGSGPYVVLP 144 L+ I+ +RV +NTTFGL G++D++ +P K+ G T WG + Y VLP Sbjct: 85 LRLDIKRASEDLVRVGINTTFGLGGLIDIAGAGGIPDNKNTLGDTFASWGWKNSNYFVLP 144 Query: 145 LLGPSTIRDT--AALPADFYGDLWSYKKPV-RWRNVGSVVRVIDKRAQLLDASNLLEDAA 201 +LGPST+RD + + + ++ PV RW + V + R LLD ++ L++AA Sbjct: 145 VLGPSTVRDALGTGITSVYSPKNIVFRTPVGRWGT--TAVSAVSTREGLLDLTDSLDEAA 202 Query: 202 LDKYDFVRDTYLQSRQSQ 219 +DKY + RD Y++ R Q Sbjct: 203 IDKYSYTRDLYMKVRARQ 220 >XF0416 [M] COG2853 Surface lipoprotein Xfa Xylella fastidiosa 9a5c Length = 351 Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 116/223 (52%), Gaps = 7/223 (3%) Query: 4 AARIAALAMVAALSGCATSQNPND------PLEGFNRAMFSFNDTVDKVALKPAAQAYQF 57 AA A++ SG PND P E +NRAM FN +D+ +P A AY Sbjct: 88 AALYGAISPSVGHSGTNNIPKPNDTHTTYDPWERYNRAMHQFNVVIDRNLARPLANAYVH 147 Query: 58 VLPNFVQTGIGNFFGNIGDLWSAVNQVLQGRIETGVTSFMRVAVNTTFGLVGVLDVSTEA 117 V+P Q G+ NFF N+ + VNQVLQ + + R +N+T GL G+LD ++ A Sbjct: 148 VVPKKAQVGVTNFFNNLSSPLTMVNQVLQNHPVYALQTLGRFLLNSTLGLGGILDPASAA 207 Query: 118 RLPKQKSDFGQTLGKWGVGSGPYVVLPLLGPSTIRDTAALPADFYGDLWSYKKPVRWRNV 177 ++P++ +FGQTL WG + Y LPL GP T+RDT L D L WR Sbjct: 208 KIPRRTENFGQTLALWGWYNSRYFELPLFGPRTVRDTFGLAGDLPLSLLRRIDNNTWRYS 267 Query: 178 GSVVRVIDKRAQLLDASNLLEDAALDKYDFVRDTYLQSRQSQI 220 ++++D RA+LL N + D A+D Y RD +LQ R QI Sbjct: 268 LQGLQLVDTRARLLSFDN-MRDGAVDDYALTRDAWLQRRNYQI 309