BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0492.p         (128 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2958 [Q] COG2854 ABC-type transport system involved in resist...   135   2e-32
NMB1963 [Q] COG2854 ABC-type transport system involved in resist...    66   2e-11
NMA0488 [Q] COG2854 ABC-type transport system involved in resist...    66   2e-11
PM0177 [Q] COG2854 ABC-type transport system involved in resista...    58   6e-09

>RSc2958 [Q] COG2854 ABC-type transport system involved in resistance to
           organic solvents, auxiliary component Rso Ralstonia
           solanacearum
          Length = 211

 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 90/126 (71%), Gaps = 5/126 (3%)

Query: 1   MGR---QATPEQQKQLITEFRSLLIYTYSGALSQIRDQKVEYKPLRADPADTEVEVRSQV 57
           MGR   QATPEQQ+Q+   F++LL+ TY+GAL+ +R+Q V YKP RA   DT+V VRS V
Sbjct: 82  MGRFWSQATPEQQQQIQDGFKTLLVRTYAGALANVRNQTVSYKPFRAAADDTDVVVRSTV 141

Query: 58  IQSRGEPIQLSYRLEKLSSGWKMYDVNVMGAWLVEAYKGTFNSEITK-GGIDGLIKSLSD 116
             + GEP+ L YR+EK ++GWK+YD+N+ G WL E YK  F   I+K GG+ GL++ L +
Sbjct: 142 -NNNGEPVALDYRMEKSANGWKVYDINISGLWLSETYKNQFAEVISKRGGVSGLVQFLDE 200

Query: 117 KNKQLA 122
           +N QLA
Sbjct: 201 RNAQLA 206


>NMB1963 [Q] COG2854 ABC-type transport system involved in resistance to
           organic solvents, auxiliary component Nme Neisseria
           meningitidis MC58
          Length = 196

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 3   RQATPEQQKQLITEFRSLLIYTYSGALSQIRDQKVEYK--PLRADPADTEVEVRSQVIQS 60
           R A+  Q++ L  EF++LLI TYSG + ++++  V  K  P+  +    E+ VR++V   
Sbjct: 77  RTASDAQKQALAKEFQTLLIRTYSGTMLKLKNANVNVKDNPI-VNKGGKEIIVRAEVGVP 135

Query: 61  RGEPIQLSYRLEKLSSGWKMYDVNVMGAWLVEAYKGTFNSEITKGGIDGLIKSLSDKN 118
             +P+ + +   +    ++ Y+V + GA LV  Y+  F   I   G+DGLI  L  KN
Sbjct: 136 GQKPVNMDFTTYQSGGKYRTYNVAIEGASLVTVYRNQFGEIIKAKGVDGLIAELKAKN 193


>NMA0488 [Q] COG2854 ABC-type transport system involved in resistance to
           organic solvents, auxiliary component NmA Neisseria
           meningitidis Z2491
          Length = 196

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 3   RQATPEQQKQLITEFRSLLIYTYSGALSQIRDQKVEYK--PLRADPADTEVEVRSQVIQS 60
           R A+  Q++ L  EF++LLI TYSG + ++++  V  K  P+  +    E+ VR++V   
Sbjct: 77  RTASDAQKQALAKEFQTLLIRTYSGTMLKLKNANVNVKDNPI-VNKGGKEIIVRAEVGVP 135

Query: 61  RGEPIQLSYRLEKLSSGWKMYDVNVMGAWLVEAYKGTFNSEITKGGIDGLIKSLSDKN 118
             +P+ + +   +    ++ Y+V + GA LV  Y+  F   I   G+DGLI  L  KN
Sbjct: 136 GQKPVNMDFTTYQSGGKYRTYNVAIEGASLVTVYRNQFGEIIKAKGVDGLIAELKAKN 193


>PM0177 [Q] COG2854 ABC-type transport system involved in resistance to
           organic solvents, auxiliary component Pmu Pasteurella
           multocida
          Length = 212

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 3   RQATPEQQKQLITEFRSLLIYTYSGALSQIRDQKVEYKPLRADPADTEVEVRSQVIQSRG 62
           +  TPEQ+++  T F   +  TY+  L+   DQK+E +  + D  +    +R +VIQ+  
Sbjct: 86  KTTTPEQREKFFTAFEQYIEQTYAQVLTLYSDQKLEIEKPKTDATEKTASIRVKVIQTGN 145

Query: 63  E-PIQLSYRLEKLSSG--WKMYDVNVMGAWLVEAYKGTFNSEITKGGIDGL 110
           + P+ L++   K S    W+++D++  G  +VE  +  ++  I K G+D L
Sbjct: 146 QPPVNLTFYWYKNSKTGKWQVFDMSAEGVSMVETKEKEWSPTIVKSGLDAL 196