BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0489.p (254 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2955 [V] COG0842 ABC-type multidrug transport system, permeas... 376 e-104 CC2244 Non COG 214 1e-55 AGc3497 [V] COG0842 ABC-type multidrug transport system, permeas... 192 9e-49 VC0590 [V] COG0842 ABC-type multidrug transport system, permease... 186 4e-47 PM0471 [V] COG0842 ABC-type multidrug transport system, permease... 186 5e-47 >RSc2955 [V] COG0842 ABC-type multidrug transport system, permease component Rso Ralstonia solanacearum Length = 262 Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/249 (74%), Positives = 216/249 (86%) Query: 2 TGFQTLFYKEVLRFWKVATQTVTAPIMTAMLYLLIFGHVLQDRVQVYPGVQYTGFLVPGL 61 TGF+TL YKEVLRFWKV+ QTV AP++TA+LYLLIFGHVL+D VQV+ + YT FL+PGL Sbjct: 13 TGFRTLLYKEVLRFWKVSFQTVAAPVLTALLYLLIFGHVLEDHVQVFGQIGYTAFLIPGL 72 Query: 62 VMMSVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLIVGAGVFV 121 VMMSVLQNAFANSSSSLIQSKITGNLVF++L PLSHWEMFG YV+A+V+RGL VGAGV V Sbjct: 73 VMMSVLQNAFANSSSSLIQSKITGNLVFIMLPPLSHWEMFGAYVVASVIRGLAVGAGVLV 132 Query: 122 VTAWFGHLSFVAPWWIVIFALLGAAILGTMGLVAGIWAEKFDQLAAFQNFLIVPLTFLAG 181 VTAWF HL F P WI++FA+LGAA+LGT+GL+AGIWAEKFDQLAAFQNFLIVP TFLAG Sbjct: 133 VTAWFAHLHFAQPLWIIVFAILGAAVLGTLGLIAGIWAEKFDQLAAFQNFLIVPATFLAG 192 Query: 182 VFYSIHSLPPFWQTVSHFNPFFYMIDGFRYGFFGQSDINPFISLAIVSVFFIALSTLAVR 241 VFYSIHSLP FWQ VSH NPFFYMIDGFRYGFFG SD+ SL ++ V + + +A++ Sbjct: 193 VFYSIHSLPAFWQVVSHANPFFYMIDGFRYGFFGVSDVPVATSLGVMVVALVVVGGIALQ 252 Query: 242 MLKSGYKLR 250 ML++GYKLR Sbjct: 253 MLRTGYKLR 261 >CC2244 Non COG Length = 273 Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 114/252 (45%), Positives = 160/252 (63%), Gaps = 2/252 (0%) Query: 2 TGFQTLFYKEVLRFWKVATQTVTAPIMTAMLYLLIFGHVLQDRVQVYPGVQYTGFLVPGL 61 +GF TL+ +E+ RFWKV TQTV AP++T +LY+L+F + GV + F+ PGL Sbjct: 22 SGFVTLYQREIRRFWKVGTQTVAAPVVTTLLYMLVFVVAVGASRPAVGGVTFGHFVAPGL 81 Query: 62 VMMSVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLIVGAGVFV 121 +MM++L NAFANSSSSLIQ+K+ G L PLS E + L A RG++VGA + Sbjct: 82 IMMAILNNAFANSSSSLIQAKMMGLTPDFLTPPLSALEQVSAFALGAATRGVVVGAVTAI 141 Query: 122 VTAWF--GHLSFVAPWWIVIFALLGAAILGTMGLVAGIWAEKFDQLAAFQNFLIVPLTFL 179 V LS W ++ F L + ILG G++AG+WAEKFDQLAA NFLI+P+TFL Sbjct: 142 VIGVLPGAGLSVAHLWAVLYFGLTASLILGLAGVLAGLWAEKFDQLAAVTNFLIMPMTFL 201 Query: 180 AGVFYSIHSLPPFWQTVSHFNPFFYMIDGFRYGFFGQSDINPFISLAIVSVFFIALSTLA 239 +G FY + LP +++ SHFNPFFY+IDGFRYGF G +D + I + + + + Sbjct: 202 SGTFYLVDKLPEPFRSASHFNPFFYLIDGFRYGFIGHADGSIAIGVVTAGLLTVVMFLWC 261 Query: 240 VRMLKSGYKLRA 251 R+ +GY+L++ Sbjct: 262 WRLFVTGYRLKS 273 >AGc3497 [V] COG0842 ABC-type multidrug transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 253 Score = 192 bits (487), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 149/246 (60%) Query: 5 QTLFYKEVLRFWKVATQTVTAPIMTAMLYLLIFGHVLQDRVQVYPGVQYTGFLVPGLVMM 64 ++++ E+ R + Q+V +P+++ LY ++FG + R+Q GV Y F+ PGL+M+ Sbjct: 7 KSIYLFEMARTRRTLLQSVVSPVISTSLYFIVFGTAIGSRIQEVGGVSYGAFITPGLIML 66 Query: 65 SVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLIVGAGVFVVTA 124 ++L +N S + K TG + +L P+S E+ GYV AA +GL++G + + + Sbjct: 67 TLLTQCISNGSFGIYFPKFTGTVYEILSAPVSMTEIVAGYVGAAATKGLMIGTIILITAS 126 Query: 125 WFGHLSFVAPWWIVIFALLGAAILGTMGLVAGIWAEKFDQLAAFQNFLIVPLTFLAGVFY 184 +F ++ P+ +V+F +L A G + GIWA F+QL ++ PLTFL G FY Sbjct: 127 FFVDITIAHPFMMVLFFVLTAVSFSLFGFIIGIWATNFEQLNLIPMLVVPPLTFLGGSFY 186 Query: 185 SIHSLPPFWQTVSHFNPFFYMIDGFRYGFFGQSDINPFISLAIVSVFFIALSTLAVRMLK 244 SI LPPFWQTVSHFNP Y+I GFR+ F+ +D+NP ISLA++++F + M K Sbjct: 187 SIDMLPPFWQTVSHFNPVLYLISGFRWSFYEIADVNPVISLAMITLFLAVCLGVVAWMFK 246 Query: 245 SGYKLR 250 +GY+LR Sbjct: 247 TGYRLR 252 >VC0590 [V] COG0842 ABC-type multidrug transport system, permease component Vch Vibrio cholerae Length = 256 Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 99/251 (39%), Positives = 153/251 (60%), Gaps = 2/251 (0%) Query: 2 TGFQTLFYKEVLRFWKVATQTVTAPIMTAMLYLLIFGHVLQDRVQVYPGVQYTGFLVPGL 61 T F +L KE+ RF ++ QT+ P +T LY +IFG+++ R+ G Y ++VPGL Sbjct: 7 TAFCSLLGKEINRFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGQMNGFSYMEYIVPGL 66 Query: 62 VMMSVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLIVGAGVFV 121 +MMSV+ N+++N +SS SK N+ +L+ P+ ++ + GYV+ V RGL+VGA V Sbjct: 67 IMMSVITNSYSNVASSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLLVGAMVTA 126 Query: 122 VTAWFGHLSFVAPWWIVIFAL-LGAAILGTMGLVAGIWAEKFDQLAAFQNFLIVPLTFLA 180 V+ F L V W I+I + L + + GL+ ++A+ FD ++ F++ PLT+L Sbjct: 127 VSLLFVDLQ-VDHWGIIIATVFLTSVVFSLGGLINAVFAKTFDDISIVPTFVLTPLTYLG 185 Query: 181 GVFYSIHSLPPFWQTVSHFNPFFYMIDGFRYGFFGQSDINPFISLAIVSVFFIALSTLAV 240 GVFYSI LP FWQ+VS NP YM++ FRYGF G SD++ S A++ F +AL +A Sbjct: 186 GVFYSISLLPEFWQSVSKINPIVYMVNAFRYGFLGVSDVDIMTSFAVLMAFVVALYCVAH 245 Query: 241 RMLKSGYKLRA 251 ++ G LR+ Sbjct: 246 YLVTKGKGLRS 256 >PM0471 [V] COG0842 ABC-type multidrug transport system, permease component Pmu Pasteurella multocida Length = 255 Score = 186 bits (471), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 105/254 (41%), Positives = 149/254 (58%), Gaps = 10/254 (3%) Query: 3 GFQTLFYKEVLRFWKVATQTVTAPIMTAMLYLLIFGHVLQDRVQVYPGVQYTGFLVPGLV 62 FQT+ KE+ RF ++ QT+ P++T LY +IFG ++ R+ GV Y F+VPGL+ Sbjct: 7 AFQTIVMKEIRRFTRIWVQTLVPPVITMTLYFVIFGQLIGSRIGEMGGVSYMQFIVPGLI 66 Query: 63 MMSVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLIVGAGVFVV 122 MMS L NAFAN +SS +K N+ +L++P S + GYV + RGL VG V +V Sbjct: 67 MMSSLTNAFANVASSFYSTKFAKNVEELLISPTSPHIIILGYVTGGMARGLCVGILVTMV 126 Query: 123 TAWFGHLSFVA----PWWIVIFAL-LGAAILGTMGLVAGIWAEKFDQLAAFQNFLIVPLT 177 LSFVA W+I++ L + A GL+ ++A FD ++ F++ PLT Sbjct: 127 A-----LSFVAFEVHSWFIIVLTLCMTTATFALGGLINAVFARSFDDISIIPTFVLTPLT 181 Query: 178 FLAGVFYSIHSLPPFWQTVSHFNPFFYMIDGFRYGFFGQSDINPFISLAIVSVFFIALST 237 +L GVFYS+ LPPFWQ VS NP YMI+GFRYGF G SD+ + ++ F + L T Sbjct: 182 YLGGVFYSLTLLPPFWQWVSKLNPIVYMINGFRYGFLGISDVTVGYTFGVLIAFMVCLYT 241 Query: 238 LAVRMLKSGYKLRA 251 LA ++ G LR+ Sbjct: 242 LAYYLISRGIGLRS 255