BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0465.p (468 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2928 [C] COG1290 Cytochrome b subunit of the bc complex Rso R... 655 0.0 NMB2052 [C] COG1290 Cytochrome b subunit of the bc complex Nme N... 541 e-153 PA4430 [C] COG1290 Cytochrome b subunit of the bc complex Pae Ps... 537 e-152 NMA0384 [C] COG1290 Cytochrome b subunit of the bc complex NmA N... 537 e-152 VC0574 [C] COG1290 Cytochrome b subunit of the bc complex Vch Vi... 454 e-127 >RSc2928 [C] COG1290 Cytochrome b subunit of the bc complex Rso Ralstonia solanacearum Length = 467 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/456 (75%), Positives = 383/456 (83%), Gaps = 8/456 (1%) Query: 20 LNWVDARFPLTSTWKAHLSEYYAPKNFNFWYAFGSLALLVLVIQIVTGIFLVMHYKPDAT 79 L W+DARFPLT TWKAHLSEYYAPKNFNFWY FGSLALLVLVIQIVTGIFLVM+YKPD T Sbjct: 13 LGWIDARFPLTETWKAHLSEYYAPKNFNFWYFFGSLALLVLVIQIVTGIFLVMNYKPDGT 72 Query: 80 L-------AFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLLYGSYRKPREL 132 L A+ASVE+IMR+VPWGWLVRYMHSTGASAFFIVVYLHM RG+LYGSYRKPREL Sbjct: 73 LNAAGIPVAYASVEFIMREVPWGWLVRYMHSTGASAFFIVVYLHMFRGMLYGSYRKPREL 132 Query: 133 VWLFGVAIFLCLMGEAFMGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLSLWIRGDYVVS 192 VW+FG IFLCLM EAFMGYLLPWGQMSYWGAQVIVNLF AIP IGPDLSLWIRGDYVVS Sbjct: 133 VWIFGCLIFLCLMAEAFMGYLLPWGQMSYWGAQVIVNLFSAIPLIGPDLSLWIRGDYVVS 192 Query: 193 DATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKLDANGIPLDGVPFH 252 DATLNRFFSFHVIA+PLVL+GLVVAHIIALHEVGSNNPDGVEIK K D GIPLDG+PFH Sbjct: 193 DATLNRFFSFHVIAVPLVLLGLVVAHIIALHEVGSNNPDGVEIKAKKDERGIPLDGIPFH 252 Query: 253 PYYSVHDIMAVAVFLIVFTAVVFFAPEMGGYFLEYNNFVPADSLKTPPHIAPVWYFTPFY 312 PYYSVHDI+ VAVFL +F+A++FFAPEMGGYFLE NNF+PADSLKTPPHIAPVWYFTPFY Sbjct: 253 PYYSVHDIVGVAVFLFLFSAILFFAPEMGGYFLEANNFIPADSLKTPPHIAPVWYFTPFY 312 Query: 313 SILRATTSDFMAYLMAGVAAYVALLVFRSQRSSIFKIAAIVIGVAVIAGMAIFDAKFWGV 372 S+LRATTS F+ L +A + LL R + I K A+ + V + G A DAKFWGV Sbjct: 313 SMLRATTSAFLPILWGFLAIMLGLLFVRCKSMKI-KGVAVAVAVILALGFAFIDAKFWGV 371 Query: 373 VLMGVSVMILGGLPWLDHSQVKSIRYRPSWHKYVYLVFGVAFVALGYLGVQPPTAVGTTI 432 V+MG SV+I +PWLD S VKSIRYRP +HK + +F VAF LGYLG+QPP+ G+ + Sbjct: 372 VVMGGSVVIFFFMPWLDQSPVKSIRYRPGFHKVLLGIFVVAFAVLGYLGIQPPSPAGSIV 431 Query: 433 AQIGTFIYFGFFLLMPWWSALGRFKPVPDRVTYHPH 468 +QIGT +YF FFL MP WS +G FKPVP+RVT+ PH Sbjct: 432 SQIGTIVYFAFFLAMPVWSRMGTFKPVPERVTFKPH 467 >NMB2052 [C] COG1290 Cytochrome b subunit of the bc complex Nme Neisseria meningitidis MC58 Length = 449 Score = 541 bits (1394), Expect = e-153, Method: Compositional matrix adjust. Identities = 288/457 (63%), Positives = 334/457 (73%), Gaps = 51/457 (11%) Query: 16 SAKAL-NWVDARFPLTSTWKAHLSEYYAPKNFNFWYAFGSLALLVLVIQIVTGIFLVMHY 74 AKAL WVDARFPL+ WK HLSEYYAPKNFNFWY FGSL++LVLVIQIV+GIFL M+Y Sbjct: 8 KAKALLGWVDARFPLSKMWKEHLSEYYAPKNFNFWYFFGSLSMLVLVIQIVSGIFLTMNY 67 Query: 75 KPDATL-------AFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLLYGSYR 127 KPD L AF +VEYIMRDV GW++RYMHSTGAS FFIVVYLHM RGL+YGSY+ Sbjct: 68 KPDGNLNAYHLPAAFTAVEYIMRDVSGGWIIRYMHSTGASFFFIVVYLHMFRGLIYGSYK 127 Query: 128 KPRELVWLFGVAIFLCLMGEAFMGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLSLWIRG 187 KPRELVW+FG IFL LM EAFMGYLLPWGQMS+WGAQVI+NLF AIP IGPDLS WIRG Sbjct: 128 KPRELVWIFGSLIFLALMAEAFMGYLLPWGQMSFWGAQVIINLFSAIPVIGPDLSTWIRG 187 Query: 188 DYVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKLDANGIPLD 247 D+ VSD TLNRFF+ HVIA+PLVL+GLVVAHIIALHEVGSNNPDGVEIK+ D NG+PLD Sbjct: 188 DFNVSDVTLNRFFALHVIAVPLVLLGLVVAHIIALHEVGSNNPDGVEIKKLKDENGVPLD 247 Query: 248 GVPFHPYYSVHDIMAVAVFLIVFTAVVFFAPEMGGYFLEYNNFVPADSLKTPPHIAPVWY 307 G+PF PYY VHDI+AV +FLIVF AV+FFAPE GGYFLE NF A++LKTPPHIAPVWY Sbjct: 248 GIPFFPYYVVHDILAVTIFLIVFCAVMFFAPEGGGYFLEAPNFDAANALKTPPHIAPVWY 307 Query: 308 FTPFYSILRATTSDFMAYLMAGVAAYVALLVFRSQRSSIFKIAAIVIGVAVIAGMAIFDA 367 FTPFY+ILRA S AG + Sbjct: 308 FTPFYAILRAIPS--------------------------------------FAGTQV--- 326 Query: 368 KFWGVVLMGVSVMILGGLPWLDHSQVKSIRYRPSWHKYVYLVFGVAFVALGYLGVQPPTA 427 WGV+ MG +V+++ LPWLD +VKS+RYR K ++F +AF+ LG LG T Sbjct: 327 --WGVIGMGAAVVLIALLPWLDKGEVKSVRYRGPIFKTALVLFIIAFIGLGILGAMVATD 384 Query: 428 VGTTIAQIGTFIYFGFFLLMPWWSALGRFKPVPDRVT 464 T +A+I +F+YF FFL MP+++ L KPVP+RVT Sbjct: 385 TRTLVARILSFVYFAFFLGMPFYTKLDTNKPVPERVT 421 >PA4430 [C] COG1290 Cytochrome b subunit of the bc complex Pae Pseudomonas aeruginosa Length = 403 Score = 537 bits (1384), Expect = e-152, Method: Compositional matrix adjust. Identities = 269/447 (60%), Positives = 326/447 (72%), Gaps = 47/447 (10%) Query: 18 KALNWVDARFPLTSTWKAHLSEYYAPKNFNFWYAFGSLALLVLVIQIVTGIFLVMHYKPD 77 K + WVDARFP T W+ HLS+YYAPKNFNFWY FGSLALLVLV QI+TGI+L M + P Sbjct: 3 KFMAWVDARFPATKMWEDHLSKYYAPKNFNFWYFFGSLALLVLVNQILTGIWLTMSFTPS 62 Query: 78 ATLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLLYGSYRKPRELVWLFG 137 A AFASVEYIMRDV +GW++RYMHSTGASAFFIVVYLHM RGLLYGSY+KPRELVW+FG Sbjct: 63 AEEAFASVEYIMRDVDYGWIIRYMHSTGASAFFIVVYLHMFRGLLYGSYQKPRELVWIFG 122 Query: 138 VAIFLCLMGEAFMGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLSLWIRGDYVVSDATLN 197 + I+L LM EAFMGYLLPWGQMSYWGAQVI++LFGAIP +G DL+ WIRGD+++S TLN Sbjct: 123 MLIYLALMAEAFMGYLLPWGQMSYWGAQVIISLFGAIPVVGEDLAQWIRGDFLISGITLN 182 Query: 198 RFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKLDANGIPLDGVPFHPYYSV 257 RFF+ HVIA+P+VL+GLVV HI+ALHEVGSNNPDGV+IK+K D NG+PLDG+ FHPYY+V Sbjct: 183 RFFALHVIALPIVLLGLVVLHILALHEVGSNNPDGVDIKKKKDENGVPLDGIAFHPYYTV 242 Query: 258 HDIMAVAVFLIVFTAVVFFAPEMGGYFLEYNNFVPADSLKTPPHIAPVWYFTPFYSILRA 317 DI+ V VFL +F V+FF PEMGGYFLE NF A+ KTP HIAPVWYFTPFY+ILRA Sbjct: 243 KDIVGVVVFLFIFCTVIFFFPEMGGYFLEKPNFEMANQFKTPEHIAPVWYFTPFYAILRA 302 Query: 318 TTSDFMAYLMAGVAAYVALLVFRSQRSSIFKIAAIVIGVAVIAGMAIFDAKFWGVVLMGV 377 M GV A MG Sbjct: 303 VPDKLM-----GVVA------------------------------------------MGA 315 Query: 378 SVMILGGLPWLDHSQVKSIRYRPSWHKYVYLVFGVAFVALGYLGVQPPTAVGTTIAQIGT 437 ++ +L LPWLD S V+SIRY+ K ++F V+FV LGY G Q P+ +GTT++++ T Sbjct: 316 AIAVLFVLPWLDRSPVRSIRYKGWLSKLWLVIFAVSFVILGYYGAQAPSPLGTTLSRVCT 375 Query: 438 FIYFGFFLLMPWWSALGRFKPVPDRVT 464 +YF FF+LMP+++ + + KPVP+RVT Sbjct: 376 VLYFAFFILMPFYTRMEKTKPVPERVT 402 >NMA0384 [C] COG1290 Cytochrome b subunit of the bc complex NmA Neisseria meningitidis Z2491 Length = 449 Score = 537 bits (1383), Expect = e-152, Method: Compositional matrix adjust. Identities = 282/457 (61%), Positives = 331/457 (72%), Gaps = 51/457 (11%) Query: 16 SAKAL-NWVDARFPLTSTWKAHLSEYYAPKNFNFWYAFGSLALLVLVIQIVTGIFLVMHY 74 AKAL W+DARFPL+ W HL++YYAPKNFNFWY FGSLALLVLVIQIV+GIFL M+Y Sbjct: 8 KAKALLGWMDARFPLSKMWNEHLAQYYAPKNFNFWYYFGSLALLVLVIQIVSGIFLTMNY 67 Query: 75 KPDATL-------AFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLLYGSYR 127 KPD L AF +VEYIMRDV GW++RYMHSTGAS FFIVVYLHM RGL+YGSY+ Sbjct: 68 KPDGNLNAYHLPAAFTAVEYIMRDVSGGWIIRYMHSTGASFFFIVVYLHMFRGLIYGSYK 127 Query: 128 KPRELVWLFGVAIFLCLMGEAFMGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLSLWIRG 187 KPRELVW+FG IFL LM EAFMGYLLPWGQMS+WGAQVI+NLF AIP IGPDLS WIRG Sbjct: 128 KPRELVWIFGSLIFLALMAEAFMGYLLPWGQMSFWGAQVIINLFSAIPVIGPDLSTWIRG 187 Query: 188 DYVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKLDANGIPLD 247 D+ VSD TLNRFF+ HVIA+PLVL+GLVVAHIIALHEVGSNNPDGVEIK+ D NGIP D Sbjct: 188 DFNVSDVTLNRFFALHVIAVPLVLLGLVVAHIIALHEVGSNNPDGVEIKKNKDENGIPRD 247 Query: 248 GVPFHPYYSVHDIMAVAVFLIVFTAVVFFAPEMGGYFLEYNNFVPADSLKTPPHIAPVWY 307 G+PFHPYY+V D++ V VFLIVF AV+FFAPE GGYFLE NF A++LKTPPHIAPVWY Sbjct: 248 GIPFHPYYTVKDVLGVVVFLIVFCAVLFFAPEGGGYFLEAPNFDAANALKTPPHIAPVWY 307 Query: 308 FTPFYSILRATTSDFMAYLMAGVAAYVALLVFRSQRSSIFKIAAIVIGVAVIAGMAIFDA 367 FTPFY+ILRA S Sbjct: 308 FTPFYAILRAIPS-------------------------------------------FLGT 324 Query: 368 KFWGVVLMGVSVMILGGLPWLDHSQVKSIRYRPSWHKYVYLVFGVAFVALGYLGVQPPTA 427 + WGV+ MG +V+++ LPWLD +VKS+RYR K ++F ++F+ LG LG T Sbjct: 325 QVWGVIGMGAAVVLIALLPWLDRGEVKSVRYRGPIFKTALVLFIISFIGLGILGAMVATD 384 Query: 428 VGTTIAQIGTFIYFGFFLLMPWWSALGRFKPVPDRVT 464 T +A+I +F+YF FFL MP+++ L + KPVP+RVT Sbjct: 385 TRTLVARILSFVYFAFFLGMPFYTKLDKNKPVPERVT 421 >VC0574 [C] COG1290 Cytochrome b subunit of the bc complex Vch Vibrio cholerae Length = 421 Score = 454 bits (1169), Expect = e-127, Method: Compositional matrix adjust. Identities = 252/463 (54%), Positives = 309/463 (66%), Gaps = 64/463 (13%) Query: 20 LNWVDARFPLTSTWKAHLSEYYAPKNFNFWYAFGSLALLVLVIQIVTGIFLVMHYKPDAT 79 L+WV+ R P + +K HLSEY PKNFNFWY FGSLA+LVLV Q++TGI+L M+Y P Sbjct: 5 LDWVEKRLPAMNAYKKHLSEYPMPKNFNFWYLFGSLAMLVLVNQLLTGIWLTMNYVPSGE 64 Query: 80 LAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLLYGSYRKPRELVWLFGVA 139 AFAS+EYIMRDV +GWL+RYMHSTGASAFF+VVYLHM RGL+YGSY+KPREL+W+FG+ Sbjct: 65 GAFASIEYIMRDVEYGWLLRYMHSTGASAFFVVVYLHMFRGLIYGSYQKPRELLWIFGML 124 Query: 140 IFLCLMGEAFMGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLSLWIRGDYVVSDATLNRF 199 IFL LM EAFMGYLLPWGQMSYWGAQVI++LFGAIP IG DL+LWIRGDYV+S ATLNRF Sbjct: 125 IFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAIPVIGDDLTLWIRGDYVISGATLNRF 184 Query: 200 FSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKLDANGIP-------------- 245 F+ HVIA+P+VL+ L+V HI+ALHEVGSNNPDG+E K + G Sbjct: 185 FALHVIALPIVLLLLIVLHILALHEVGSNNPDGIETKLPKGSMGEGYESQFKFHEYYTKK 244 Query: 246 ---LDGVPFHPYYSVHDIMAVAVFLIVFTAVVFFAPEMGGYFLEYNNFVPADSLKTPPHI 302 +D +PFHPY +V D++ VA FL +F V+FF PEMGGYFLE NF A+ LKTP HI Sbjct: 245 YDIIDSIPFHPYGTVKDLIGVAGFLFLFCYVLFFNPEMGGYFLEPPNFEAANPLKTPEHI 304 Query: 303 APVWYFTPFYSILRATTSDFMAYLMAGVAAYVALLVFRSQRSSIFKIAAIVIGVAVIAGM 362 APVWYFTPFY+ILRA + Sbjct: 305 APVWYFTPFYAILRAVPDKLLG-------------------------------------- 326 Query: 363 AIFDAKFWGVVLMGVSVMILGGLPWLDHSQVKSIRYRPSWHKYVYLVFGVAFVALGYLGV 422 V+ MG S+++L LPWLD +V+S RYR +H + F V+F+ALG LG Sbjct: 327 ---------VIAMGASIVVLFLLPWLDRCKVRSYRYRSKFHLFNIAQFTVSFIALGILGA 377 Query: 423 QPPTAVGTTIAQIGTFIYFGFFLLMPWWSALGRFKPVPDRVTY 465 P T T +AQI + YF FF+L+ ++S KP+P RVTY Sbjct: 378 LPATPTYTLLAQIFSLCYFMFFVLLFFYSKNEATKPLPTRVTY 420