BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0462.p         (163 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2925 Non COG                                                       175   4e-44
NMA0499 [R] COG2969 Stringent starvation protein B NmA Neisseria...   136   2e-32
NMB1952 [R] COG2969 Stringent starvation protein B Nme Neisseria...   136   2e-32
YPO3560 [R] COG2969 Stringent starvation protein B Ype Yersinia ...   128   5e-30
HI1440 [R] COG2969 Stringent starvation protein B Hin Haemophilu...   114   1e-25

>RSc2925 Non COG
          Length = 165

 Score =  175 bits (443), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 116/170 (68%), Gaps = 12/170 (7%)

Query: 1   MPEVSTKPYLLRAIYEWCTDNGYTPHIAVVVDASTRVPMQFVKNGEIVLNISFEATSGLK 60
           M E STKPYL+RAIYEWCTDNG+TP+IAV VD ST VP +FVKN EIVLN+SF+ATS L 
Sbjct: 1   MSETSTKPYLIRAIYEWCTDNGFTPYIAVFVDNSTNVPREFVKNDEIVLNVSFDATSQLD 60

Query: 61  MDNDFINFSARFGGVSRDISVPVENVIAIYARENGQGMAF----EAPAVLAVGDTEDAPE 116
           M N++I+F ARF GVSR I VPV+NV+A+YARENGQGMAF      P   A  + E++P 
Sbjct: 61  MGNEWISFHARFSGVSRKIEVPVDNVLAVYARENGQGMAFPVERSTPPAQAATERENSPP 120

Query: 117 SAPGSVQAPGLASVPTANKANAGSKSAPDDEPEP---PKKGGRPVLTRIK 163
               +V++   A  P   +   GS    DDEP P   P+ GG+P L  +K
Sbjct: 121 PKLSAVESEA-APEPATAETQGGS----DDEPTPPSVPRIGGKPSLKVVK 165


>NMA0499 [R] COG2969 Stringent starvation protein B NmA Neisseria
           meningitidis Z2491
          Length = 130

 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 81/104 (77%), Gaps = 1/104 (0%)

Query: 1   MPEVSTKPYLLRAIYEWCTDNGYTPHIAVVVDASTRVPMQFVKNGEIVLNISFEATSGLK 60
           MP  STKPY+LRA+ EWC+DN  TPHI V V+  TRVPMQ+V++ EI+LNI   AT  L+
Sbjct: 1   MP-TSTKPYILRALCEWCSDNSLTPHILVWVNEHTRVPMQYVRDNEIMLNIGATATQNLQ 59

Query: 61  MDNDFINFSARFGGVSRDISVPVENVIAIYARENGQGMAFEAPA 104
           +DND+I+FSARFGG + DI +PV +V++++ARE G+GM FE  A
Sbjct: 60  IDNDWISFSARFGGQAHDIWIPVGHVLSLFARETGEGMGFELEA 103


>NMB1952 [R] COG2969 Stringent starvation protein B Nme Neisseria
           meningitidis MC58
          Length = 130

 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 81/104 (77%), Gaps = 1/104 (0%)

Query: 1   MPEVSTKPYLLRAIYEWCTDNGYTPHIAVVVDASTRVPMQFVKNGEIVLNISFEATSGLK 60
           MP  STKPY+LRA+ EWC+DN  TPHI V V+  TRVPMQ+V++ EI+LNI   AT  L+
Sbjct: 1   MP-TSTKPYILRALCEWCSDNSLTPHILVWVNEHTRVPMQYVRDNEIMLNIGATATQNLQ 59

Query: 61  MDNDFINFSARFGGVSRDISVPVENVIAIYARENGQGMAFEAPA 104
           +DND+I+FSARFGG + DI +PV +V++++ARE G+GM FE  A
Sbjct: 60  IDNDWISFSARFGGQAHDIWIPVGHVLSLFARETGEGMGFELEA 103


>YPO3560 [R] COG2969 Stringent starvation protein B Ype Yersinia pestis
          Length = 171

 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 94/162 (58%), Gaps = 5/162 (3%)

Query: 7   KPYLLRAIYEWCTDNGYTPHIAV-VVDASTRVPMQFVKNGEIVLNISFEATSGLKMDNDF 65
           +PYLLRA YEW  DN  TPH+ V V      VPM+F ++G+IVLN++  A   L++ ND 
Sbjct: 10  RPYLLRAFYEWLIDNQLTPHLVVDVTRPGVSVPMEFARDGQIVLNVAPRAVGNLELSNDD 69

Query: 66  INFSARFGGVSRDISVPVENVIAIYARENGQGMAFEAPAVL---AVGDTEDAPESAPGSV 122
           + F+ARFGGV R ++VP+  V+AIYARENG G  FE  A     A G+ E        + 
Sbjct: 70  VRFNARFGGVPRQVTVPIAAVMAIYARENGSGTMFEPEAAYDADADGNFEGIEGKENETA 129

Query: 123 QAPGLASVPTANKANAGSKSAPDDE-PEPPKKGGRPVLTRIK 163
               L  V    +      ++PDD+ P+PP+ GGRP L  +K
Sbjct: 130 PTESLMLVTDDTRVEQDDDNSPDDKPPQPPRSGGRPALRVVK 171


>HI1440 [R] COG2969 Stringent starvation protein B Hin Haemophilus
           influenzae
          Length = 150

 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 81/121 (66%), Gaps = 5/121 (4%)

Query: 7   KPYLLRAIYEWCTDNGYTPHIAVVVDAS---TRVPMQFVKNGEIVLNISFEATSGLKMDN 63
           +PYLLRA Y+W  DN +TP++  VVDA+     VP+++VK+G+IVLN+S  AT  L++ N
Sbjct: 9   RPYLLRAYYDWLVDNSFTPYL--VVDATYLGVNVPVEYVKDGQIVLNLSASATGNLQLTN 66

Query: 64  DFINFSARFGGVSRDISVPVENVIAIYARENGQGMAFEAPAVLAVGDTEDAPESAPGSVQ 123
           DFI F+ARF GVSR++ +P+   +AIYARENG G+ FE   +    + E   E   G  +
Sbjct: 67  DFIQFNARFKGVSRELYIPMGAALAIYARENGDGVMFEPEEIYDELNIEPDTEQPTGFYE 126

Query: 124 A 124
           A
Sbjct: 127 A 127