BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0449.p (435 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0507 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 290 4e-78 SMc03265 [E] COG0665 Glycine/D-amino acid oxidases (deaminating)... 256 1e-67 mll6285 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 243 6e-64 BMEI0256 [E] COG0665 Glycine/D-amino acid oxidases (deaminating)... 230 5e-60 mll3980 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 225 2e-58 >RSc0507 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Rso Ralstonia solanacearum Length = 423 Score = 290 bits (742), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 179/425 (42%), Positives = 240/425 (56%), Gaps = 9/425 (2%) Query: 13 SSSTSAARHVVVIGAGAVGLMSALHALDQGFQVTIVDPGQPGGEQASSYGNAGWLSSHSV 72 +++ + R + V+GAG VG+ AL G +VT++D Q G + SYGNAG LS SV Sbjct: 5 TAAPAGRRAITVVGAGIVGVSCALQLQRDGHRVTLLD--QAGIGEGCSYGNAGCLSVASV 62 Query: 73 LPPSEPGVWKKVPGFLADPLGPLSVRWRYLPRTLPWLLRYLAAGSTTARISATAAALXLL 132 + + PG+ +VP +LADPLGPL+VRW YLPR LPWLL+++ AG T AR A A L L Sbjct: 63 VAMALPGMLAQVPKWLADPLGPLTVRWSYLPRALPWLLKWIRAG-TEARARAVARPLADL 121 Query: 133 HGAA-PLHKAIAEQAGVGDLIDLGGLLHIYRSRAHFEADARGWGIRRKLGIGWQELSAQE 191 A P ++ + E A DLI G L+++R+ A + IR G+ Q LSA E Sbjct: 122 FSATYPGYRGLLEPAQYDDLIRATGHLYVWRTLARGPGEVLAQSIRDATGVRSQALSAGE 181 Query: 192 LHAREPDLDPAYGFGVLIPEAGHCRNPGAYIAALAAHACARGARLTAVTATGFRFEGNGL 251 + EP L G+L+P+ G NP + LAAH A G + F G Sbjct: 182 VRELEPALAGDIRSGLLLPDNGFTCNPERLVKTLAAHFVAAGGTVLRRKVLDFALGERGP 241 Query: 252 AAVQTDAGDILCDAAVIAAGAQSKALAAK-AGDKVPLETERGYHAMVLAPEGRPRTPMMI 310 + TD G + VI AGA S L A+ G ++PL+TERGYHAM+ AP +P P+M Sbjct: 242 TRLYTDCGSLPVSTLVICAGAWSMRLGARLTGVRIPLDTERGYHAMLRAPTVQPSRPVMD 301 Query: 311 MDRKVIATQTEEGLRVAGQVEIASFDAAPDWRRAEIMRDLALKLFPALPRDLPANRVRYW 370 +RK IAT E+GLR+AG VEI D PD+RRA+ + LFP L + W Sbjct: 302 CERKFIATPMEDGLRIAGTVEIGGLDIPPDFRRADTLTRHGQALFPGLAFTGDSA----W 357 Query: 371 LGRRPSMPDGLPCIGRSSHSVDIIHAFGHGHIGLGSSARTGRLVGQLLAGQLPEIDMAPF 430 +G RPS+PD LP I RS D+ AFGHGH+G+ + TGRL+ L+AG+ P ID P+ Sbjct: 358 MGYRPSIPDSLPVIDRSERFPDVFFAFGHGHLGMTGAPGTGRLIADLVAGRPPFIDARPY 417 Query: 431 SAQRF 435 QRF Sbjct: 418 GLQRF 422 >SMc03265 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Sme Sinorhizobium meliloti Length = 429 Score = 256 bits (653), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 159/415 (38%), Positives = 218/415 (52%), Gaps = 10/415 (2%) Query: 23 VVIGAGAVGLMSALHALDQGFQVTIVDPGQPGGEQASSYGNAGWLSSHSVLPPSEPGVWK 82 +V+GAG VGL A AL G V IVD P G++AS +GNAG ++ V+P S PG+WK Sbjct: 7 IVVGAGIVGLSVAYGALRNGVSVMIVDR-NPEGDKAS-FGNAGGIAVTEVVPASVPGLWK 64 Query: 83 KVPGFLADPLGPLSVRWRYLPRTLPWLLRYLAAGSTTARISATAAALXLLHGAA--PLHK 140 KVP ++ DPLGPL++R + PR LPWL + G T + + + AL ++G L Sbjct: 65 KVPFWMLDPLGPLALRMAHTPRLLPWLWNFARVG-TASEVRRISTALADINGRVYDDLLP 123 Query: 141 AIAEQAGVGDLIDLGGLLHIYRSRAHFEADARGWGIRRKLGIGWQELSAQELHAREPDLD 200 E GDL+ G L +Y S D W +R LG+ QEL+A E+ EP L Sbjct: 124 LFNEVGLAGDLLQKGAL-TVYESENGLRNDMHDWDAKRDLGVEVQELTAAEIREMEPALS 182 Query: 201 PAYGFGVLIPEAGHCRNPGAYIAALAAHACARGARLTAVTATGFRFEGNGLAAVQTDAGD 260 P GV P+ H ++P + L A GA + +G V + Sbjct: 183 PIVKNGVFTPQWSHIKDPKRVVDVLRHWLVANGAEIVRGEVDRVVPTSDGAKVVLDGGRE 242 Query: 261 ILCDAAVIAAGAQSKALAAKAGDKVPLETERGYHAMVLAPEGRPRTPMMIMDRKVIATQT 320 + VIAAGA S LA + GD+V +E+ERGY + +P ++ DRK +AT Sbjct: 243 MTARKIVIAAGAWSGRLAKQMGDRVLVESERGYTTTIASPGVALEREVIFADRKFVATPL 302 Query: 321 EEGLRVAGQVEIASFDAAPDWRRAEIMRDLALKLFPALPRDLPANRVRYWLGRRPSMPDG 380 GLR+ G E + AP++ R++ + LA FP D+ W G RP+ PD Sbjct: 303 SIGLRIGGAAEFGGLEVAPNYARSKALVKLAKHYFP----DIREEGGVEWSGHRPTTPDS 358 Query: 381 LPCIGRSSHSVDIIHAFGHGHIGLGSSARTGRLVGQLLAGQLPEIDMAPFSAQRF 435 LP IGRS S +II+AFGHGH+GL TG++V LL G+ P ID+APFS RF Sbjct: 359 LPVIGRSGPSSNIIYAFGHGHLGLTQGPTTGKIVSDLLLGRKPLIDIAPFSVARF 413 >mll6285 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Mlo Mesorhizobium loti Length = 411 Score = 243 bits (620), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 159/419 (37%), Positives = 219/419 (52%), Gaps = 16/419 (3%) Query: 22 VVVIGAGAVGLMSALHALDQGFQVTIVDPGQPGGEQASSYGNAGWLSSHSVLPPSEPGVW 81 V+V+GAG VGL A AL G VTI+D P G++AS +GNAG ++ V+P S PG+W Sbjct: 3 VIVVGAGIVGLSVAYEALLSGAAVTIID-RDPEGDKAS-FGNAGGIAVTEVIPLSVPGLW 60 Query: 82 KKVPGFLADPLGPLSVRWRYLPRTLPWLLRYLAAGSTTA--RISATAAALX--LLHGAAP 137 KKVP + DPLGPL+VR R+ P PWL R+ GS + RIS A + + P Sbjct: 61 KKVPFWALDPLGPLAVRIRHTPHLFPWLWRFAKVGSASEVRRISGALAEINSRVYDDLVP 120 Query: 138 LHKAIAEQAGVGDLIDLGGLLHIYRSRAHFEADARGWGIRRKLGIGWQELSAQELHAREP 197 L + G+ + + G L +Y S + D W +R LG+ QELSA ++ EP Sbjct: 121 LFNKV----GLANDLFRKGALTVYESESGLRRDRPEWDAKRALGVESQELSASQVRDMEP 176 Query: 198 DLDPAYGFGVLIPEAGHCRNPGAYIAALAAHACARGARLTAVTATGFRFEGNGLAAVQTD 257 L P GV P+ H +P + L GA + +G AA+ + Sbjct: 177 ALGPIVKNGVFTPQWSHVSDPKRIVDVLRCWLADNGAEILQDQVDRVEPRTDG-AALTLN 235 Query: 258 AGDILCDAA-VIAAGAQSKALAAKAGDKVPLETERGYHAMVLAPEGRPRTPMMIMDRKVI 316 G L A VIAAG S LA + GD+V LE+ERGY+ + +P ++ DRK + Sbjct: 236 GGKTLRAAKIVIAAGVWSAQLAKQLGDRVLLESERGYNTTIASPGVVLEREVIFADRKFV 295 Query: 317 ATQTEEGLRVAGQVEIASFDAAPDWRRAEIMRDLALKLFPALPRDLPANRVRYWLGRRPS 376 AT GLR+ G E AAP++ R++ + LA P + + W G RP+ Sbjct: 296 ATPLSIGLRIGGAAEFGGLKAAPNFNRSKALVTLAKLYLPGIKEEGGVE----WSGHRPA 351 Query: 377 MPDGLPCIGRSSHSVDIIHAFGHGHIGLGSSARTGRLVGQLLAGQLPEIDMAPFSAQRF 435 PD LP IGRS S II+AFGHGH+GL TG++VG LL + P +++ PFS RF Sbjct: 352 TPDSLPVIGRSGPSPRIIYAFGHGHLGLTQGPTTGKIVGDLLFERKPCLNVEPFSVARF 410 >BMEI0256 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Bme Brucella melitensis Length = 420 Score = 230 bits (586), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 136/396 (34%), Positives = 204/396 (51%), Gaps = 6/396 (1%) Query: 40 DQGFQVTIVDPGQPGGEQASSYGNAGWLSSHSVLPPSEPGVWKKVPGFLADPLGPLSVRW 99 + G +V ++D + G + +S GNA L+ +LP + GV +KVPG+L DPLGP ++R Sbjct: 29 EAGREVLVID--RTGICEETSSGNAAALAFSDILPLASKGVMRKVPGWLLDPLGPFTIRP 86 Query: 100 RYLPRTLPWLLRYLAAGSTTARISATAAALXLLHGAAPLHKAIAEQAGVGDLIDLGGLLH 159 Y P+ LPWL R+ A + A A ++ A ++ E+AG+ + + G L Sbjct: 87 TYFPKMLPWLYRFWRASAPNALARTAIAQAAIMRLAENEMLSLIERAGLRNRLREDGNLE 146 Query: 160 IYRSRAHFEADARGWGIRRKLGIGWQELSAQELHAREPDLDPAYGFGVLIPEAGHCRNPG 219 +Y S A A GW +R K GI ++ + + L +P L+P + G +P + +P Sbjct: 147 LYESEAELAASQPGWDVREKAGIAYEHVRGRRLAELQPGLNPRFVAGTFVPGWKNVSDPK 206 Query: 220 AYIAALAAHACARGARLTAVTATGFRFEGNGLAAVQTDAGDILCDAAVIAAGAQSKALAA 279 + A+ ++A + GAR + + + G+ + +I V+ AGA S+ LA Sbjct: 207 LFGKAIWSYAESLGARFLSGKVASAKRQNGGVRLRLENGVEINATHLVLMAGAWSRDLAK 266 Query: 280 KAGDKVPLETERGYHAMVLAPEGRPRTPMMIMDRKVIATQTEEGLRVAGQVEIASFDAAP 339 GD VPL+TERGY+ + + + + T E GLRV G VE D P Sbjct: 267 GFGDIVPLDTERGYNTTLPVGSFDVKRQLTFPGHGFVITPMETGLRVGGAVEFGGLDLPP 326 Query: 340 DWRRAEIMRDLALKLFPALPRDLPANRVRYWLGRRPSMPDGLPCIGRSSHSVDIIHAFGH 399 ++ R+E M A K P L R W+G RPSMPD LP IGR+S ++ + FGH Sbjct: 327 NFARSEAMLKKASKFLPG----LKVEGGRQWMGYRPSMPDSLPVIGRASAGGNVYYGFGH 382 Query: 400 GHIGLGSSARTGRLVGQLLAGQLPEIDMAPFSAQRF 435 GH+GL SA T RL+ L+ G P ID+ PF QRF Sbjct: 383 GHLGLTQSAATARLIRDLITGSEPAIDIEPFKLQRF 418 >mll3980 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Mlo Mesorhizobium loti Length = 437 Score = 225 bits (573), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 136/396 (34%), Positives = 211/396 (53%), Gaps = 6/396 (1%) Query: 40 DQGFQVTIVDPGQPGGEQASSYGNAGWLSSHSVLPPSEPGVWKKVPGFLADPLGPLSVRW 99 + G VTI D + G + +S GNA + VLP + G+ K +P +LADPLGPLS+ Sbjct: 48 EAGRSVTIFD--RSGICEETSSGNAAAFAFSDVLPLAHKGMIKNLPKWLADPLGPLSIPP 105 Query: 100 RYLPRTLPWLLRYLAAGSTTARISATAAALXLLHGAAPLHKAIAEQAGVGDLIDLGGLLH 159 YLPR LPWL+R+ AG+ ++ A ++ A + +++G ++ G L Sbjct: 106 AYLPRLLPWLIRFWRAGAPAKYEASLIAQAGMMKLAEAEWMDLLDRSGTRPMLREDGSLE 165 Query: 160 IYRSRAHFEADARGWGIRRKLGIGWQELSAQELHAREPDLDPAYGFGVLIPEAGHCRNPG 219 +Y S A F A GW R + GIG++ + + L +P L P + G +P +P Sbjct: 166 LYESEAEFRASLSGWAARERFGIGFRHVEGEGLVGLQPGLSPRFIKGTFVPGWKTVADPK 225 Query: 220 AYIAALAAHACARGARLTAVTATGFRFEGNGLAAVQTDAGDILCDAAVIAAGAQSKALAA 279 A+ A+A A+GAR + +G + D+ VIAAGA S LA Sbjct: 226 LLGKAVWAYARAKGARFEMARIDQIAADQDGATLMLADSTTRQARQLVIAAGAWSHLLAR 285 Query: 280 KAGDKVPLETERGYHAMVLAPEGRPRTPMMIMDRKVIATQTEEGLRVAGQVEIASFDAAP 339 + GD++PLETERGY+ + + ++ + T + GLRV G VE+ + P Sbjct: 286 QLGDRIPLETERGYNTTLPRSAFDVKRQLIFSGHGFVITPLDTGLRVGGAVELGGIERPP 345 Query: 340 DWRRAEIMRDLALKLFPALPRDLPANRVRYWLGRRPSMPDGLPCIGRSSHSVDIIHAFGH 399 ++ R++ + A + P L + R W+G RPS+PD +P IG++S S +++AFGH Sbjct: 346 NFARSKALLRKAQQFLPG----LNPSGGREWMGFRPSLPDSVPVIGKASGSRPVVYAFGH 401 Query: 400 GHIGLGSSARTGRLVGQLLAGQLPEIDMAPFSAQRF 435 GH+GL +A TGRL+ +++ GQ+ ID+APF QRF Sbjct: 402 GHLGLTQAAATGRLIREIIMGQVASIDLAPFGPQRF 437