BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0446.p         (157 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1377 [K] COG1522 Transcriptional regulators Rso Ralstonia sol...   147   7e-36
DR1894 [K] COG1522 Transcriptional regulators Dra Deinococcus ra...   147   8e-36
RSc3102 [K] COG1522 Transcriptional regulators Rso Ralstonia sol...   139   3e-33
mll9538 [K] COG1522 Transcriptional regulators Mlo Mesorhizobium...   137   1e-32
PA4508 [K] COG1522 Transcriptional regulators Pae Pseudomonas ae...   135   4e-32

>RSp1377 [K] COG1522 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 152

 Score =  147 bits (372), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 106/152 (69%)

Query: 1   MELDAIDLRILSTLQQNSALSNLELSSKINLSPSPTLARVKRLENEGIISRYVALGNPHL 60
           ME DAID RILS LQ++  L N+EL+ ++ LSPSP L RV+ LE  G+I RYVA+ NP  
Sbjct: 1   MEFDAIDRRILSALQRDGRLQNIELAKEVGLSPSPCLRRVRLLEEAGVIERYVAVLNPAK 60

Query: 61  LGLKVNVFIKISLEKQESATLAQFEEAVSAFDEVMEVYLMTGDEDYLLRLVVPDLQALEH 120
           +G  ++VF +I L+ Q++AT+  F  A+    EV+E +LM GD D+LLR+V  DL+    
Sbjct: 61  VGKGLSVFARIWLKGQDAATVDAFTAAIQQLPEVVECHLMAGDCDFLLRVVAADLEDYRQ 120

Query: 121 FVLDHLTKIPGIKNIRSSFALKQVKYKTALPL 152
           F + +LT+IPG++++++   ++++K  +ALP+
Sbjct: 121 FQIQYLTRIPGVQSVKTEVPMQKIKLTSALPV 152


>DR1894 [K] COG1522 Transcriptional regulators Dra Deinococcus radiodurans
          Length = 195

 Score =  147 bits (372), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 104/151 (68%)

Query: 2   ELDAIDLRILSTLQQNSALSNLELSSKINLSPSPTLARVKRLENEGIISRYVALGNPHLL 61
           +LD  D +ILS LQ+++ ++N EL+ +I L+P+PTL RV+RLE EG+I RYVAL +P L+
Sbjct: 42  DLDPTDRQILSILQRDARIANTELADEIGLTPAPTLRRVRRLEEEGVIHRYVALLDPKLV 101

Query: 62  GLKVNVFIKISLEKQESATLAQFEEAVSAFDEVMEVYLMTGDEDYLLRLVVPDLQALEHF 121
              + V ++++L+KQ       F E + A  EV+E YL  GD DYLL++ VP+L A + F
Sbjct: 102 NRDLMVMVRVTLDKQTKQGFQDFAEHMRARPEVLECYLCLGDTDYLLKVCVPNLDAYQRF 161

Query: 122 VLDHLTKIPGIKNIRSSFALKQVKYKTALPL 152
           ++D L  IPG++N  S+  +KQ KY T+LPL
Sbjct: 162 LVDVLAAIPGVRNTDSTIVVKQEKYTTSLPL 192


>RSc3102 [K] COG1522 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 162

 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 102/157 (64%), Gaps = 5/157 (3%)

Query: 1   MELDAIDLRILSTLQQNSALSNLELSSKINLSPSPTLARVKRLENEGIISRYVALGNPHL 60
           +ELD ID +IL  LQ N  L+NLE++ ++NLSPSP L R++RLE  G+I +Y AL +P  
Sbjct: 4   VELDKIDRKILEVLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIRQYAALLDPGK 63

Query: 61  LGLKVNVFIKISLEKQESATLAQ-----FEEAVSAFDEVMEVYLMTGDEDYLLRLVVPDL 115
           +GL ++ +I + LEKQ  A   +     F  AV+ + EV+  Y MTG+ DYLL++ V D+
Sbjct: 64  IGLGLSAYINVRLEKQGGAPKGKAPSDIFRAAVATWPEVVTCYAMTGEMDYLLKVFVEDM 123

Query: 116 QALEHFVLDHLTKIPGIKNIRSSFALKQVKYKTALPL 152
                F+ D L   P + +++SSFAL+++K  TALP+
Sbjct: 124 DHFARFIRDQLLAHPAVIDVKSSFALERIKDTTALPV 160


>mll9538 [K] COG1522 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 155

 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 97/149 (65%)

Query: 3   LDAIDLRILSTLQQNSALSNLELSSKINLSPSPTLARVKRLENEGIISRYVALGNPHLLG 62
           LDAIDL+I++ LQ+N+  +  +L+  + LSPSP   RV+ LE  G+I  Y  + +   LG
Sbjct: 6   LDAIDLKIIAALQKNAKATTNDLAEAVGLSPSPCARRVRLLERAGVIKGYTVVLDQKKLG 65

Query: 63  LKVNVFIKISLEKQESATLAQFEEAVSAFDEVMEVYLMTGDEDYLLRLVVPDLQALEHFV 122
           L ++ F  I LE+Q    L +F +AV  + EV++ YLMTG  DYL+R+VV DL+A E F+
Sbjct: 66  LPISAFASIKLERQREDDLDRFSQAVLRWPEVVDCYLMTGQRDYLMRIVVRDLEAYERFI 125

Query: 123 LDHLTKIPGIKNIRSSFALKQVKYKTALP 151
            D LT++  I +I SSFAL QVK   ALP
Sbjct: 126 KDKLTRLDNIASIESSFALGQVKRSEALP 154


>PA4508 [K] COG1522 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 157

 Score =  135 bits (340), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 103/155 (66%)

Query: 1   MELDAIDLRILSTLQQNSALSNLELSSKINLSPSPTLARVKRLENEGIISRYVALGNPHL 60
           M+LDA D RIL+ LQ++  LSN++L+ +I LSPSP L RV+ LE  G+I  Y A  +   
Sbjct: 1   MKLDAYDHRILAALQRDGRLSNVQLAEEIGLSPSPCLRRVRLLEEAGVIRGYQASIDRDE 60

Query: 61  LGLKVNVFIKISLEKQESATLAQFEEAVSAFDEVMEVYLMTGDEDYLLRLVVPDLQALEH 120
           +GL + VF+ I +E+        F  AV    EV+ V+L++G+ D+LL++VVPDL+A E 
Sbjct: 61  VGLGLTVFVGIKVERHRQEQAEAFHRAVVDLPEVISVHLVSGESDFLLQVVVPDLRAYER 120

Query: 121 FVLDHLTKIPGIKNIRSSFALKQVKYKTALPLGNL 155
            + + L ++PG+ +IRS+FA+K VK    LPLG+L
Sbjct: 121 LLSETLLRLPGVSDIRSNFAIKTVKAPAPLPLGHL 155