BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0425.p (750 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2587_2 [R] COG3378 Predicted ATPase Lin Listeria innocua 265 4e-70 RSc0839_2 Non COG 237 9e-62 RSc3229_2 Non COG 227 8e-59 XF0705 [R] COG3378 Predicted ATPase Xfa Xylella fastidiosa 9a5c 209 2e-53 XF2505 [R] COG3378 Predicted ATPase Xfa Xylella fastidiosa 9a5c 198 3e-50 >lin2587_2 [R] COG3378 Predicted ATPase Lin Listeria innocua Length = 456 Score = 265 bits (676), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 140/416 (33%), Positives = 235/416 (56%), Gaps = 8/416 (1%) Query: 264 DKGDAERMANLYHDKLHYVEEKEQWLAWTGFLWRPVGKEFVMQCLKDLSNTVRKE-AKQE 322 D G+AER + +HD + + + + + +W+ V + D+ ++ E A + Sbjct: 13 DTGNAERFRDKFHDIVRFSYINKGFYYYDSKVWKYDNIGAVKTLVDDVIKDMKSEFAYMD 72 Query: 323 IDSARKKTLLEHALKLEGASKLENVLKLFKSEPKILTSV--SAIDSHGSLISVANGTFDL 380 +S +K ++H N+LK E + L V D + ++ NG +L Sbjct: 73 NESDAEKAFMKHLKATRSNKGKTNMLK----EAQHLMPVLPEEFDRYKYFLNTQNGYINL 128 Query: 381 LTDSFHAPNPSLMMTVGTNIVFDPEAKAPRWEKFISEIMNDNEALVECLQRIVGYCLTNS 440 + M T +NI + + AP W+ F+++I ++ L+ +Q+ VGY L+ S Sbjct: 129 QNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLNDIFAGDKELINYMQKAVGYSLSGS 188 Query: 441 VAEQCIFFFYGHGANGKSTLLNILLELLGDMGTQAQGELLLEGSRNSSGASPDIARLEGK 500 +EQ +F +G+G NGKS L+I+ ++ G T Q + ++ + SS A+ DIARL G Sbjct: 189 TSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIMV-KQQSSNANSDIARLHGA 247 Query: 501 RVIAVSEFNDGKHLNEAQVKSLTGGDVITARYLFKNQFTFKMTGKLIVASNHKPIIKGTD 560 R + +E N+G L+E VK LTGGD +TAR+L+K++F F K+ +A+NHKPII+G D Sbjct: 248 RFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFEFTPEFKIWMATNHKPIIRGRD 307 Query: 561 HGIWRRIHLIPFEVKFEKERQDKKLEQRLRDELPGILNWAIEGYRKWRESGLAIPASIAR 620 GIWRR+HL+PF VK E+ DK+L+ +LR EL GILNWA+EG+ KW++ GL +P ++ Sbjct: 308 DGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELTGILNWAVEGFLKWQKEGLGMPKAVEN 367 Query: 621 KTAEYRKEMDMLGMWLDEHCLIDSSKSVSFSDAYLSFSPWVKEYFNIDLSKNRFGR 676 ++EY+ EMD++ ++++ C + + V+ Y ++ W KE +S +FG+ Sbjct: 368 ASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYETYHEWAKENGQYLMSSTKFGK 423 >RSc0839_2 Non COG Length = 441 Score = 237 bits (604), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 145/424 (34%), Positives = 207/424 (48%), Gaps = 15/424 (3%) Query: 263 TDKGDAERMANLYHDKLHYVEEKEQWLAWTGFLWRPVGKEFVMQCLKDLSNTVRKEAKQE 322 T+ G A Y D Y +WL WTG W P ++ LS + + A + Sbjct: 3 TEDGLATAFTRRYGDDWRYCSLWGKWLVWTGVRWNPDQLLYITH----LSRGICRAASFK 58 Query: 323 IDSARKKTLLEHALKLEGASKLENVLKLFKSEPKILTSVSAIDSHGSLISVANGTFDLLT 382 ++ R+K KL +S + +V K+ +S+PK + D+ ++ G DL T Sbjct: 59 AETPRQKA------KLASSSTIASVEKIARSDPKHAATADEWDADVWALNTPGGVVDLRT 112 Query: 383 DSFHAPNPSLMMTVGTNIVFDPEAKAPRWEKFISEIMNDNEALVECLQRIVGYCLTNSVA 442 A MT T P+ P W +F+SE+ + L LQR+ GY LT S Sbjct: 113 GQLRAHRREDRMTKVTTAT--PKGDCPTWRQFLSEVTGGDVELQAYLQRMAGYALTGSTQ 170 Query: 443 EQCIFFFYGHGANGKSTLLNILLELLGDMGTQAQGELLLEGSRNSSGASPDIARLEGKRV 502 E +FF YG GANGKS +N L +LGD A + +E + D+A L G R Sbjct: 171 EHALFFLYGTGANGKSVFVNTLATILGDYAVNAAMDTFMETRADRH--PTDMAGLRGARF 228 Query: 503 IAVSEFNDGKHLNEAQVKSLTGGDVITARYLFKNQFTFKMTGKLIVASNHKPIIKGTDHG 562 +A E G+ E++VK+LTGGD I+AR++ ++ F F KL VA NHKP I+ D Sbjct: 229 VAAIETEQGRRWAESKVKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHKPAIRNIDEA 288 Query: 563 IWRRIHLIPFEVKFEKERQDKKLEQRLRDELPGILNWAIEGYRKWRESG-LAIPASIARK 621 + RR+HLIPF V R+DK L+Q+L E GIL WA++G W+ G L P + Sbjct: 289 MKRRLHLIPFTVTVPPARRDKTLQQKLLAERDGILAWAVQGCLDWQRLGRLDPPQQVLDA 348 Query: 622 TAEYRKEMDMLGMWLDEHCLIDSSKSVSFSDAYLSFSPWVKEYFNIDLSKNRFGRLLTER 681 T EY + D LG WLDE C+ + + ++ + + W S+ RF LL R Sbjct: 349 TEEYFEAEDALGRWLDERCVREINAKTLTAELFNDWKQWADSAGEFVGSQRRFSDLLITR 408 Query: 682 GFEK 685 G EK Sbjct: 409 GVEK 412 >RSc3229_2 Non COG Length = 458 Score = 227 bits (578), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 141/412 (34%), Positives = 202/412 (49%), Gaps = 15/412 (3%) Query: 275 YHDKLHYVEEKEQWLAWTGFLWRPVGKEFVMQCLKDLSNTVRKEAKQEIDSARKKTLLEH 334 YH YV +WL W G WR E + DL V + A ++ R Sbjct: 32 YHRDWRYVAAWGRWLVWDGHRWR---TEDTLAA-TDLIRNVCRHAALHAENPRL------ 81 Query: 335 ALKLEGASKLENVLKLFKSEPKILTSVSAIDSHGSLISVANGTFDLLTDSFHAPNPSLMM 394 A KL + + V +L +++ + + S D+ L++ G DL T + M Sbjct: 82 AAKLATSGTIAGVERLARADRRHAATTSEWDADPWLLNTPGGVVDLRTGRQRPHDRDDRM 141 Query: 395 TVGTNIVFDPEAKAPRWEKFISEIMNDNEALVECLQRIVGYCLTNSVAEQCIFFFYGHGA 454 T T P P W +F++E+ + L LQR+ GY LT S E +FF YG GA Sbjct: 142 TKITTAT--PVGDCPTWRQFLAEVTGGDVELQAYLQRMAGYALTGSTQEHALFFLYGTGA 199 Query: 455 NGKSTLLNILLELLGDMGTQAQGELLLEGSRNSSGASPDIARLEGKRVIAVSEFNDGKHL 514 NGKS +N L +LGD A + +E + D+A L G R +A E G+ Sbjct: 200 NGKSVFVNTLATILGDYAANAAMDTFMETRADRH--PTDMAGLRGARFVAAIETEQGRRW 257 Query: 515 NEAQVKSLTGGDVITARYLFKNQFTFKMTGKLIVASNHKPIIKGTDHGIWRRIHLIPFEV 574 E++VK+LTGGD I+AR++ ++ F F KL VA NHKP I+ D + RR+HLIPF V Sbjct: 258 AESKVKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTV 317 Query: 575 KFEKERQDKKLEQRLRDELPGILNWAIEGYRKWRESG-LAIPASIARKTAEYRKEMDMLG 633 ER+DK L+Q+L E GIL WA++G W+ G L P + T EY + D LG Sbjct: 318 TVPPERRDKHLQQKLLAERDGILAWAVQGCLDWQRLGRLDPPQQVLDATEEYFEAEDALG 377 Query: 634 MWLDEHCLIDSSKSVSFSDAYLSFSPWVKEYFNIDLSKNRFGRLLTERGFEK 685 WLDE C+ +++ ++ + + W + S+ RF LL RG EK Sbjct: 378 RWLDERCVREANAKSLTAELFNDWKQWAEAAGEFAGSQKRFADLLLTRGVEK 429 >XF0705 [R] COG3378 Predicted ATPase Xfa Xylella fastidiosa 9a5c Length = 845 Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 142/445 (31%), Positives = 219/445 (49%), Gaps = 38/445 (8%) Query: 261 LCTDKGDAERMANLYHDKLHYVEEKEQWLAWTGFLWRPVGKEFVMQCLKDLSNTVRKEAK 320 L TDK +A R+A Y ++ + E+W W G W + LK LS +R E + Sbjct: 367 LTTDKANAVRIAKHYGKRI--MVSAERWFVWEGTHWAHDTDAARLLTLK-LSKIIRGEVE 423 Query: 321 Q----EIDSARKKT--------LLEHALKLEGASKLENVLKLFKSEPKILTSVSAIDSHG 368 Q D+ ++K+ L K E S +E + L KS ++ +D+ Sbjct: 424 QWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMALAKS--MLVVKAERLDTDP 481 Query: 369 SLISVANGTFDLLTDSFHAPNPSLMMTVGTNIVFDPEAKAPRWEKFISEIMND----NEA 424 L++ ANGT DL T + A P MT + + P+A AP + K ++ I + + Sbjct: 482 WLLNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTPDAAAPVFRKTLARITCEEGQAQQP 541 Query: 425 LVECLQRIVGYCLTNSVAEQCIFFFYGHGANGKSTLLNILLELLGDMGTQAQGELLLEGS 484 L + LQR GYC T SV E + YG G NGKSTLL+++ +LG A LL++ Sbjct: 542 LSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGVLGRYAGVAAPGLLMDAG 601 Query: 485 RNSSGASPDIARLEGKRVIAVSEFNDGKHLNEAQVKSLTGGDVITARYLFKNQFTFKMTG 544 + +IA L G+R++ V+E ++G L E VK TGGD++ ARY+ + F F T Sbjct: 602 HDRH--PTEIADLVGRRMVTVNETSEGGILREGFVKQATGGDMLKARYMRADFFDFPPTH 659 Query: 545 KLIVASNHKPIIKGTDHGIWRRIHLIPFEVKFEKERQ----------DKKLEQRLRDELP 594 KL + +NHKP+IKG D GIW R+ LIPFE +F + D K+ ++L E Sbjct: 660 KLQLLTNHKPVIKGQDVGIWSRLMLIPFEARFGTAEEVKAGVAQYPIDHKITEKLAAERE 719 Query: 595 GILNWAIEGYRKWRESGLAIPASIARKTAEYRKEMDMLGMWLDEHCLIDSSKSVSFSDA- 653 G+L W + G +W GL PA + + +Y+ E D + ++ + C++ + Sbjct: 720 GVLAWLVAGAVEWYREGLTPPAIVRDASKDYQTEQDRIAQFIKDECVLGMEHEEKLTAPM 779 Query: 654 ----YLSFSPWVKEYFNIDLSKNRF 674 Y +++ W K+ LSK RF Sbjct: 780 GGGLYPAYTQWCKDSGVYALSKTRF 804 >XF2505 [R] COG3378 Predicted ATPase Xfa Xylella fastidiosa 9a5c Length = 819 Score = 198 bits (504), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 137/443 (30%), Positives = 221/443 (49%), Gaps = 34/443 (7%) Query: 261 LCTDKGDAERMANLYHDKLHYVEEKEQWLAWTGFLWRPVGKEFVMQCLKDLSNTVRKEAK 320 L TD +A R+A Y +L + ++W W G W + LK LS +R E + Sbjct: 341 LTTDMANAVRIAKHYGKRL--MVSGDRWFVWEGTHWAHDTDAARLLALK-LSKIIRGEVE 397 Query: 321 Q----EIDSARKKTL---LEHALKLEGA-SKLENVLKLFKSEPKILTSVSA--IDSHGSL 370 Q D+ ++K+ + AL+ G S++ + ++ + K + +V +D+ L Sbjct: 398 QWRTKRADTEKEKSKNAKIAAALEAWGKRSEMRSTVEAMMALAKCMIAVKPKQLDTDPWL 457 Query: 371 ISVANGTFDLLTDSFHAPNPSLMMTVGTNIVFDPEAKAPRWEKFISEIMND----NEALV 426 ++ ANGT DL T + A P MT + + P+A AP + K + I + + L Sbjct: 458 LNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTPDAAAPVFRKTLERITCEEGQAQQPLS 517 Query: 427 ECLQRIVGYCLTNSVAEQCIFFFYGHGANGKSTLLNILLELLGDMGTQAQGELLLEGSRN 486 + LQR GYC T SV E + YG G NGKSTLL+++ +LG A LL++ + Sbjct: 518 DFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGHD 577 Query: 487 SSGASPDIARLEGKRVIAVSEFNDGKHLNEAQVKSLTGGDVITARYLFKNQFTFKMTGKL 546 +IA L G+R++ V+E ++G L E VK TGGD++ ARY+ + F F+ T KL Sbjct: 578 RH--PTEIADLVGRRMVTVNETSEGGLLREGFVKQATGGDMLKARYMRADFFDFQPTHKL 635 Query: 547 IVASNHKPIIKGTDHGIWRRIHLIPFEVKFEKERQ----------DKKLEQRLRDELPGI 596 + +NHKP+IKG D GIW R+ LIPF+ +F + D K+ ++L E G+ Sbjct: 636 QLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREGV 695 Query: 597 LNWAIEGYRKWRESGLAIPASIARKTAEYRKEMDMLGMWLDEHCLIDSSKSVSFSDA--- 653 L W + G +W GL P + + +Y+ E D + ++ + C++ + Sbjct: 696 LAWLVAGAVEWYREGLNPPEIVRDASKDYQTEQDRVTQFISDECVLGMEHEEKLTAPMGG 755 Query: 654 --YLSFSPWVKEYFNIDLSKNRF 674 Y +++ W K+ LSK RF Sbjct: 756 GLYPAYTQWCKDSGVYALSKVRF 778