BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0398.p         (156 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.14c [FJ] COG0590 Cytosine/adenosine deaminases Spo Schiz...    86   4e-17
MA3407 [FJ] COG0590 Cytosine/adenosine deaminases Mac Methanosar...    83   3e-16
VC0864 [FJ] COG0590 Cytosine/adenosine deaminases Vch Vibrio cho...    80   2e-15
PM0078 [FJ] COG0590 Cytosine/adenosine deaminases Pmu Pasteurell...    74   1e-13
HI0906 [FJ] COG0590 Cytosine/adenosine deaminases Hin Haemophilu...    70   1e-12

>SPCC965.14c [FJ] COG0590 Cytosine/adenosine deaminases Spo Schizosaccharomyces
           pombe
          Length = 162

 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 7/155 (4%)

Query: 3   FNDSDSKAMRLAIEASGEALANGDMPFGATLVSAQGEILLISANNQNSAADCTGHAEMVL 62
            ++ D   +R AI+ S +A   G  PFG  +V     +++ SA N+    D T HAE   
Sbjct: 6   LSEKDLAYLREAIKVSQQARDEGQHPFGCIIVDENDNVIM-SAGNRVPDGDVTQHAETRA 64

Query: 63  VRTAQKQLGLGALRGSTVYASGEPCAMCCGAMFWGGVRRVVYAASTAQIAEALGG----P 118
           V    K      L   T+Y S EPCAMC GA+FW G+RR+++  S   + +        P
Sbjct: 65  VGLITKTRR--DLEKCTLYTSTEPCAMCSGAIFWSGIRRMIFGLSNENLIKLTQKSGECP 122

Query: 119 LLPLRSAEVLAAATPAMTVDGPLMGDEAFAVLRRF 153
            L + S ++L AA+  + V GP + DEA    + F
Sbjct: 123 PLYINSRDILGAASHPIEVVGPYIEDEAIIPHKGF 157


>MA3407 [FJ] COG0590 Cytosine/adenosine deaminases Mac Methanosarcina
           acetivorans str.C2A
          Length = 162

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 4   NDSDSKAMRLAIEASGEALANGDMPFGATLVSAQGEILLISANNQNSAADCTGHAEMVLV 63
           ++ D+  MR AIE S E++  G  PFGA +++  G+I+  S N      D T HAE+  +
Sbjct: 7   SEKDTLFMRRAIELSLESVKKGGGPFGA-VITKNGKIISESCNQVTVLNDPTAHAEISAI 65

Query: 64  RTAQKQLGLGALRGSTVYASGEPCAMCCGAMFWGGVRRVVYAASTAQIAEALG 116
           R A ++L    L+G  +YAS EPC MC GA++W  + RV + A+T + A+ +G
Sbjct: 66  REAARKLNAPDLKGCEIYASCEPCPMCLGAIYWARIDRVFF-ANTREDADNIG 117


>VC0864 [FJ] COG0590 Cytosine/adenosine deaminases Vch Vibrio cholerae
          Length = 193

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 81/151 (53%), Gaps = 6/151 (3%)

Query: 3   FNDSDSKAMRLAIEASGEALANGDMPFGATLVSAQGEILLISANNQNSAADCTGHAEMVL 62
           F+  D + MR AI  + +A A G++P GA LV   GEI+    N   +  D T HAE+ +
Sbjct: 24  FSAQDEQFMRRAIVLAAQAEAQGEVPVGAVLVR-DGEIIAEGWNGSITNHDATAHAEIEV 82

Query: 63  VRTAQKQLGLGALRGSTVYASGEPCAMCCGAMFWGGVRRVVYAASTAQIAEALGGPLLPL 122
           +R A K L    L  +T+Y + EPC MC GA+    V+R+VY A   +   A  G ++ L
Sbjct: 83  IRKAGKALSNYRLLDTTLYVTLEPCPMCAGALLHSRVKRIVYGAPDLKAGAA--GTVMDL 140

Query: 123 RSAEVLAAATPAMTVDGPLMGDEAFAVLRRF 153
            S++   AA    TV+  L+ +E  A L+ F
Sbjct: 141 FSSQ---AAYHYATVEKGLLEEECRAQLQAF 168


>PM0078 [FJ] COG0590 Cytosine/adenosine deaminases Pmu Pasteurella
           multocida
          Length = 166

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 60/104 (57%)

Query: 4   NDSDSKAMRLAIEASGEALANGDMPFGATLVSAQGEILLISANNQNSAADCTGHAEMVLV 63
           +D D K MR A+  + +A   G++P GA LV  QG +L    N   S +D T HAE+V +
Sbjct: 3   SDMDEKWMRHALRLADKAEQLGEIPVGAVLVDEQGNLLGEGWNLSISESDPTAHAEIVAL 62

Query: 64  RTAQKQLGLGALRGSTVYASGEPCAMCCGAMFWGGVRRVVYAAS 107
           R   ++L    L  +T+Y + EPC MC GA+    ++R+V+ AS
Sbjct: 63  RQGGQRLQNYRLLNTTLYVTLEPCTMCAGAILHSRIKRLVFGAS 106


>HI0906 [FJ] COG0590 Cytosine/adenosine deaminases Hin Haemophilus
           influenzae
          Length = 173

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 56/101 (55%)

Query: 7   DSKAMRLAIEASGEALANGDMPFGATLVSAQGEILLISANNQNSAADCTGHAEMVLVRTA 66
           D K MR A+E + +A A G++P GA LV     I+    N     +D T HAE++ +R  
Sbjct: 11  DEKMMRYALELADKAEALGEIPVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEIIALRNG 70

Query: 67  QKQLGLGALRGSTVYASGEPCAMCCGAMFWGGVRRVVYAAS 107
            K +    L  ST+Y + EPC MC GA+    ++R+V+ AS
Sbjct: 71  AKNIQNYRLLNSTLYVTLEPCTMCAGAILHSRIKRLVFGAS 111