BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0369.p         (103 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

alr1867 [K] COG0640 Predicted transcriptional regulators Nos Nos...    99   2e-21
BS_yczG [K] COG0640 Predicted transcriptional regulators Bsu Bac...    81   5e-16
Cgl2985 [K] COG0640 Predicted transcriptional regulators Cgl Cor...    80   2e-15
mlr2511 [K] COG0640 Predicted transcriptional regulators Mlo Mes...    79   2e-15
SMb21169 [K] COG0640 Predicted transcriptional regulators Sme Si...    76   2e-14

>alr1867 [K] COG0640 Predicted transcriptional regulators Nos Nostoc sp. PCC
           7120
          Length = 112

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 64/96 (66%)

Query: 6   MRPYKHPAVSELALERVLYALSDSIRLDIVRHLARVEAATCGELDGGRPKSTVSHHFKVL 65
           MR   HP   +++L  VLYAL D  RL+IVR LA      C E D    KST+S+HFK+L
Sbjct: 1   MRFLYHPDRKDISLPGVLYALGDPARLEIVRLLASKGEQCCAEFDFAIAKSTMSNHFKIL 60

Query: 66  REAGLVLTETTGTSHMNTLRRADIDSRFPGLLTAIL 101
           RE+G+VLT   GT H+N LRR D+++ FPGLL A+L
Sbjct: 61  RESGVVLTRKEGTQHINRLRREDLETLFPGLLDAVL 96


>BS_yczG [K] COG0640 Predicted transcriptional regulators Bsu Bacillus
           subtilis
          Length = 104

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 11  HPAVSELALERVLYALSDSIRLDIVRHLARVEAATCGEL-DGGRPKSTVSHHFKVLREAG 69
           HP    L L +VL+ALSD +RL++V+ LA  +  TC    D    KST+SHHFKVLRE+G
Sbjct: 6   HPETETLQLTKVLHALSDPLRLELVKQLAEAKEKTCSTCADVQVAKSTLSHHFKVLRESG 65

Query: 70  LVLTETTGTSHMNTLRRADIDSRFPGLLTAIL 101
           +      G     +LR  D++  FPGLL A+L
Sbjct: 66  IAQVRIEGKRRYYSLRAEDLEKAFPGLLEAVL 97


>Cgl2985 [K] COG0640 Predicted transcriptional regulators Cgl
           Corynebacterium glutamicum
          Length = 112

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 63/102 (61%), Gaps = 13/102 (12%)

Query: 7   RPYKHPAVSELALERVLYALSDSIRLDIVRHLARVEAATCGELDGG-------RPKSTVS 59
           R  +HP+++E+ L  +++ALSD IR  I+  L      +CG  D           KST +
Sbjct: 3   RKLEHPSLAEMNLNAIMFALSDPIRRQILSQL------SCGHNDQACVAFELPVSKSTST 56

Query: 60  HHFKVLREAGLVLTETTGTSHMNTLRRADIDSRFPGLLTAIL 101
           HHF+VLREAGL+     GT+ ++ LR  D+++RFPGLLT+++
Sbjct: 57  HHFRVLREAGLITQRYEGTAILSALRSEDMEARFPGLLTSVM 98


>mlr2511 [K] COG0640 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 118

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 4/95 (4%)

Query: 11  HPAVSELALERVLYALSDSIRLDIVRHLARVE--AATCGE-LDGGRPKSTVSHHFKVLRE 67
           HP   +++L  VL  L D  RL IVR+LA  E  A  C + LD G  K+ +S+H   LRE
Sbjct: 5   HPNTDQISLPIVLGVLGDPTRLAIVRYLASKEGVALNCSQFLDLGS-KTNLSYHLAKLRE 63

Query: 68  AGLVLTETTGTSHMNTLRRADIDSRFPGLLTAILA 102
           AG+   E  GT+ M TLRRAD+D+RFPGLL +++A
Sbjct: 64  AGVTRAEVVGTNRMITLRRADLDARFPGLLDSVIA 98


>SMb21169 [K] COG0640 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 141

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 11  HPAVSELALERVLYALSDSIRLDIVRHLARVEA--ATCGELDGGRPKSTVSHHFKVLREA 68
           HP   ++ L  VL AL D  RL IV +LAR       C        K+ +S+H   LREA
Sbjct: 23  HPTADQITLSNVLVALGDPTRLAIVGYLARRAGRPTMCLNFTDFGSKTNISYHLAKLREA 82

Query: 69  GLVLTETTGTSHMNTLRRADIDSRFPGLLTAIL 101
           G+  TE +GTS + TLRR D+D RFPGLL +I+
Sbjct: 83  GITRTEVSGTSRLITLRRDDLDIRFPGLLDSII 115