BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0360.p (1141 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value MA3542_2 [NT] COG1352 Methylase of chemotaxis methyl-accepting p... 348 3e-95 SMb20515_2 [NT] COG1352 Methylase of chemotaxis methyl-accepting... 288 4e-77 SMb20515_3 [T] COG2202 FOG Sme Sinorhizobium meliloti 279 3e-74 MA1989_2 [NT] COG1352 Methylase of chemotaxis methyl-accepting p... 265 4e-70 RSp1178 [T] COG0642 Signal transduction histidine kinase Rso Ral... 248 6e-65 >MA3542_2 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Mac Methanosarcina acetivorans str.C2A Length = 531 Score = 348 bits (894), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 205/532 (38%), Positives = 311/532 (58%), Gaps = 34/532 (6%) Query: 4 IMDLLRTRSGHDFSHYKKATVLRRIERRMQVSRTASLQEYFRYLTTHPDETPSLLQDMLI 63 I +L+ T +GHDFSHYK+ T+ RR+ERRM V +++EY YL + E +L +D LI Sbjct: 7 IFNLVFTHTGHDFSHYKRGTISRRVERRMVVHNIGNIEEYVNYLEQNSLEVEALFRDFLI 66 Query: 64 SVTNFFRDRESFETLEREYIPAIFAGAEKGAPIRVWSAGCASGEEAYSLGMLLAEQRALL 123 +VT+FFR+ ++F+ L+ + IP +F IR+W GC++GEEAYS+G+L+ E LL Sbjct: 67 NVTSFFRNPDAFDVLKEKIIPNLFIDKLVDESIRIWVPGCSTGEEAYSIGILIQEHMDLL 126 Query: 124 NSSVDIQVFATDIDDRAISIARQGLYPESIVTDVAPGKLRQFFIR-EDGHYRIKKTLREK 182 +Q+FATDID AI AR G YP SI DV+ +L +FF + DG YR++K +R+ Sbjct: 127 KQPFKVQIFATDIDAHAIEQARIGAYPASISVDVSKERLGRFFTQGPDGSYRVQKVIRDM 186 Query: 183 VLFAAHNILRDPPFSRVHLISCRNLLIYLNREVQEKVFEMFHFALVPGGYLYLGSSESAE 242 V+F+ H++++DPPFS++ L+SCRN+LIY++ E+Q+++ +FH+AL PG +L+LG+SE+ Sbjct: 187 VIFSDHDLIKDPPFSKLDLVSCRNVLIYMDGELQKRLIPIFHYALNPGKFLFLGTSENVY 246 Query: 243 VASKYFTPVDKKNRIYRAVV-----MTHG-AHYVPP-LPYRRHGAPEIRNYIEVESRP-- 293 + F +D+K ++Y++ H A +VPP L R P E P Sbjct: 247 GFTNLFDTLDRKAKLYKSRKSGEDEQYHAIAKFVPPQLELRETQKPS-------EEVPIG 299 Query: 294 AVRYAEL-HQRLIEQYAPPSVLINRTGEVVHVSKTAGIYLRYPTGEPSHDLVALIIPELR 352 + EL Q L++ YAP SVL+N GE++++ G+YL G +++ + LR Sbjct: 300 ESKLRELSEQMLLQLYAPASVLVNEKGEILYIHGRTGMYLELAPGGAGMNILKMAREGLR 359 Query: 353 LELRTALFQVQQNNTNAETRQVSVERDGKRSNIALTLRII---PDEGLQNQFILILFNES 409 +L + + + V+ +G + LT+ + P + L+ F ES Sbjct: 360 QKLIKVFHKAAVDKKPLFYPGLQVKTNGDFVIVNLTIVPVNASPRKVSGPNLFLVTFEES 419 Query: 410 ------ATDEPIDHHEESGT-------SFIAKQLENELFITKGQLQTTIEQYETSAEELK 456 T+E + GT L EL + + L+ + E+ E S EELK Sbjct: 420 PESEQNKTEEAVARCAREGTDEGKMGIDMRILTLRRELELKEEDLKASNEELEASNEELK 479 Query: 457 ASNEELQAINEELRSTTEELETSKEELQSINEELITVNHELKMKVDETGKSN 508 +SNEE+Q+INEEL+ST EELETSKEELQS NEEL+TVN EL+ KV E ++N Sbjct: 480 SSNEEMQSINEELQSTNEELETSKEELQSTNEELVTVNAELQNKVTELSQAN 531 >SMb20515_2 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Sme Sinorhizobium meliloti Length = 301 Score = 288 bits (738), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 136/259 (52%), Positives = 190/259 (73%), Gaps = 1/259 (0%) Query: 4 IMDLLRTRSGHDFSHYKKATVLRRIERRMQVSRTASLQEYFRYLTTHPDETPSLLQDMLI 63 I+ +R R+GHDFS YK+AT+LRRI RR Q++R + +Y+ YL +P+E +L D LI Sbjct: 7 ILAHVRGRTGHDFSQYKRATILRRIGRRAQIARRETFADYYNYLRENPEEAQALFSDFLI 66 Query: 64 SVTNFFRDRESFETLEREYIPAIFAGAEKGAPIRVWSAGCASGEEAYSLGMLLAEQRALL 123 SVT FFRD +FE L IP +F G E IRVW GCA+GEE Y++GMLL E+ A Sbjct: 67 SVTTFFRDPSAFEALAERVIPQLFDGKEVADAIRVWIPGCATGEETYTMGMLLIEEAARR 126 Query: 124 NSSVDIQVFATDIDDRAISIARQGLYPESIVTDVAPGKLRQFFIREDGHYRIKKTLREKV 183 + S +IQVF +D+D++A+ IAR+G YP +I +D++ +LR+FF RE HYR+++ LR+ V Sbjct: 127 DLSPEIQVFGSDLDEQALRIAREGRYPSTIESDLSEERLRRFFQREGDHYRVRRELRDVV 186 Query: 184 LFAAHNILRDPPFSRVHLISCRNLLIYLNREVQEKVFEMFHFALVPGGYLYLGSSESAEV 243 LFA+H++LRDPPFS + +ISCRNLLIYL+R++Q++V FH+AL GG+L+LGSSESA+ Sbjct: 187 LFASHSLLRDPPFSHLDMISCRNLLIYLDRQLQQQVCNTFHYALNAGGFLFLGSSESADH 246 Query: 244 ASKYFTPVDKKNRIYRAVV 262 + T VD++ RIYRAV Sbjct: 247 PGLFLT-VDREARIYRAVA 264 >SMb20515_3 [T] COG2202 FOG Sme Sinorhizobium meliloti Length = 453 Score = 279 bits (713), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 171/433 (39%), Positives = 257/433 (59%), Gaps = 29/433 (6%) Query: 300 LHQRLIEQYAPPSVLINRTGEVVHVSKTAGIYLRYPTGEP-SHDLVALIIPELRLELRTA 358 +H++++E+ APPS+L++ + +H+S+ AG +LR P+G P S D L+ E R ++R A Sbjct: 2 VHRQMLEKIAPPSMLVDESHHAIHLSENAGRFLR-PSGGPVSTDATDLVREEFRFDVRAA 60 Query: 359 LFQVQQNNTNAETRQVSVERDGKRSNIALTLRIIPDEGLQNQFILILFNESATDEPIDHH 418 L + + + + + + DG+ + L ++ + + + L+LF E E ID Sbjct: 61 LHRAFERDEPTLSMPILADLDGQPHRVYLQVKPVVQGTERTRHALVLFIEG---EAIDKT 117 Query: 419 EE------SGTSFI---AKQLENELFITKGQLQTTIEQYETSAEELKASNEELQAINEEL 469 +E G I ++L+ EL + + +L+ T E+ T+ EEL+A+NEELQ++NEE Sbjct: 118 QEVVLDTLDGRPTIDEAIRRLQEELQLAQNRLRLTSEESATATEELRAANEELQSMNEEY 177 Query: 470 RSTTEELETSKEELQSINEELITVNHELKMKVDETGKSNDDLQNFISATEIATIFVDRSM 529 RST EELETSKEELQSINEEL TVN+ELK+K++ +++ DLQN ++AT+IAT+F+D S+ Sbjct: 178 RSTAEELETSKEELQSINEELQTVNNELKLKLESISRAHSDLQNLMAATDIATLFLDPSL 237 Query: 530 RIKRYTPRSADIFKLIPTDVGRPLLDISHRLEYELLEEDAARVFETLRPCEREVKSDTGH 589 RIKR+TPR +IF + P+D GRP+ D +H L+Y+ L +DA V ETLRP E EVKS Sbjct: 238 RIKRFTPRLTEIFNVTPSDEGRPITDFTHYLKYKRLSDDARAVLETLRPLEHEVKSRNDG 297 Query: 590 RYIARLIPYRTNEDQISGLVLTFIDITSLHLAQSKLAAE----ELRMRVVAASTRDYAII 645 Y+ R+ PYRT ED+I G+V+TF+DI+ A+ E MR+V S I Sbjct: 298 WYLVRMRPYRTVEDKIDGVVVTFLDISERRHAEEAAKESGRRLEQEMRLVELSR--SPIF 355 Query: 646 TMDPTGKITFWNNGAERIFGYSEEEILGQHLDRIFTPEDRDNLVPAQELT----TAKKEG 701 D I WN G+E ++GYS EE +G+ + + VP T ++G Sbjct: 356 VWDFDDGIMQWNRGSEELYGYSREEAIGRRKEELLK-----TAVPGSSFDRLRRTLSEKG 410 Query: 702 HASDERWHLRKDG 714 S E H KDG Sbjct: 411 RWSGELNHTTKDG 423 >MA1989_2 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Mac Methanosarcina acetivorans str.C2A Length = 263 Score = 265 bits (677), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 119/257 (46%), Positives = 180/257 (70%), Gaps = 1/257 (0%) Query: 4 IMDLLRTRSGHDFSHYKKATVLRRIERRMQVSRTASLQEYFRYLTTHPDETPSLLQDMLI 63 I +L+ + HDFSHYKK T++RR+ERRM V + EY YL P E +L +D LI Sbjct: 7 IFNLVFAHTSHDFSHYKKGTIVRRVERRMAVHNIKKIDEYVDYLEQKPAEVEALFRDFLI 66 Query: 64 SVTNFFRDRESFETLEREYIPAIFAGAEKGAPIRVWSAGCASGEEAYSLGMLLAEQRALL 123 SVTNFFR+ ++F+ +++ IP +F G G IRVW GC++GEEAYS+G+LL E L Sbjct: 67 SVTNFFRNPKAFDAFQKKIIPNLFVGKYAGESIRVWVPGCSTGEEAYSIGILLQEHMEAL 126 Query: 124 NSSVDIQVFATDIDDRAISIARQGLYPESIVTDVAPGKLRQFFIR-EDGHYRIKKTLREK 182 + ++Q+FATDID +AI AR G YP SI DV+ +L +FF + DG+YRI+K +R+ Sbjct: 127 KQTFNVQIFATDIDSQAIEEARIGTYPPSISVDVSEERLERFFTQGPDGNYRIRKNIRDM 186 Query: 183 VLFAAHNILRDPPFSRVHLISCRNLLIYLNREVQEKVFEMFHFALVPGGYLYLGSSESAE 242 V+F+ H++++DPPFS++ L+SCRN+LIY++ E+Q+++ +F++AL PG +L+LGSSE+ Sbjct: 187 VIFSEHDLVKDPPFSKLDLLSCRNVLIYMDGELQKRLIPLFYYALNPGKFLFLGSSETVN 246 Query: 243 VASKYFTPVDKKNRIYR 259 F +D+K ++Y+ Sbjct: 247 GFMNLFDTLDRKAKLYQ 263 >RSp1178 [T] COG0642 Signal transduction histidine kinase Rso Ralstonia solanacearum Length = 676 Score = 248 bits (633), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 169/488 (34%), Positives = 256/488 (52%), Gaps = 20/488 (4%) Query: 647 MDPTGKITFWNNGAERIFGYSEEEILGQHLDRIFTPEDRDNLVPAQELTTAKKEGHASDE 706 +D T T+ +N +FG E+LG+ + +F L A + A G + Sbjct: 176 VDNTMHFTWVHN---PVFGLQPHELLGRTVREVFGRRAASRLTDAGQRVIAT--GLPTRV 230 Query: 707 RWHLRKDGTKVFCSGILT---RLDDEEMTGYAKIARDLTSSKELETKREARLALETATRL 763 + R+ T+ ++ R D E+ G D+T ++ E +R L E+ R Sbjct: 231 EFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDITEHRQAEARRALLLEAESRARE 290 Query: 764 KAEEAVRLREEFLAVLSHELKHPLNLIQLNAELLKRIPLTQDQGKITRIADVIRSTVQTQ 823 +AE A RL+++FLA +SHEL+ PLN + A+LL P D+ R + I + +TQ Sbjct: 291 EAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAMRPY--DEAMFRRGLEAIERSARTQ 348 Query: 824 AKIIDDLLDLSRAQTGKLTLRKTLVDIVGITEKITRVFETDTQNKGIELRYQSAVPSLLV 883 +IDDLLD+S +GK+ L VD+ + E+ E + K I + + +P L+ Sbjct: 349 VHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKQITVDTEY-LPVPLL 407 Query: 884 FGDTTRLEQILWNLLSNAVKFTPSGGKIFVTLGVEGSNALITVSDSGKGISSHFLPHIFR 943 GD RL+Q+ WNLL+NAVKFTP GG + +T+ + TV D+G GI FLPH+F Sbjct: 408 QGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAGADGLVATVRDTGIGIEPTFLPHVFD 467 Query: 944 MFEQADAVTTREHGGLGIGLALVRQLAESHGGRVEVESGGLEKGAKFSVWLPLY----DG 999 F+QAD +TR HGGLG+GLA+ +QL E H G + S G + G +V LPL+ + Sbjct: 468 RFQQADLSSTRRHGGLGLGLAIAKQLVELHHGHITAASSGADLGTTMAVTLPLHAPPSNE 527 Query: 1000 DHADAPLQPIDEDLDLLHGKTLLLIDDHIENLETLRDLLSSHGAIVTAKSSGVEALAETA 1059 AP L G +L++DD+ E+L + +L +GA V +SG AL Sbjct: 528 PPGRAPGLVTGTAAPALDGLRVLVVDDNAESLGVIALMLERYGAEVVTVASGAAALDALD 587 Query: 1060 RRQ----FDLVVSDIAMPKMDGYQFIALLRKQPQGSAVPVIALTGFGRAIDVQTAMESGF 1115 R FD +VSD+AMP MDG Q + +R + +A+P IA+T F I ++ A E+G+ Sbjct: 588 RAAGGPPFDALVSDLAMPGMDGMQLLRAIRARGL-TALPAIAVTAFADPIRLKAAKEAGY 646 Query: 1116 TAHLQKPI 1123 + + KPI Sbjct: 647 QSVITKPI 654