BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0356.p (294 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1570 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 155 8e-38 AGl911 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 155 1e-37 PA1309 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 147 2e-35 SMb21535 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 143 4e-34 sll1594 [K] COG0583 Transcriptional regulator Syn Synechocystis 125 1e-28 >PA1570 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 293 Score = 155 bits (393), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 157/283 (55%) Query: 1 MYQYHKWIRSFHAVAKTRSFTAAATYLQIGQPTISEQVKALEDRFAVELLYRSGRHVELT 60 M H +++FHAVA SFT AA L + QP +S+QV+ LE+R+ V L +R+ R V L+ Sbjct: 1 MSVSHAQLKAFHAVAVYGSFTRAAERLFLTQPAVSDQVRKLEERYGVLLFHRNKRSVRLS 60 Query: 61 DAGQRLYEITEGIFGQEDEAVQLLQSLHSQKTGLLRIGAVSPPVVMNLTYDLMHRHPGIE 120 + G+RL +T+ +F E EA +LL + + +TG L + +P V+ R+PGI Sbjct: 61 ELGERLLAVTQRLFAIEAEAEELLSASSALQTGTLTLAVDAPVHVLPQIARFCERYPGIA 120 Query: 121 FAISINSEKETLSRLYDFTIDIAILAYVDPDKRLYVIPYRTYPIVAVVRDDHAWANKASV 180 + + E+L RL+ + D+A+L D+RL + R PIVA V H WA + S+ Sbjct: 121 VRVETGNTDESLQRLFSYQADLALLGRDVSDERLLSLTLRNDPIVAFVSLSHPWAGRESI 180 Query: 181 PLKQIQHEAIIMRESGSKTRELLEQACSKQDIRINCVMELNSREAIMHAIAEGLGIGFVA 240 L + +++RE GS TR+ LE+ S+ +RI +++ REA A+ G+G+G V+ Sbjct: 181 RLADLDDMPLVLREQGSVTRQTLEEEMSRAGLRICPAIQVEGREASREAVVAGIGVGVVS 240 Query: 241 EIEYTAIPGTKAIRLRDAQVNINYYMCALAVRKNRPLIKNVLD 283 E+ A A+ + D Q + + L +++R +++ LD Sbjct: 241 AAEFGADTRVHALPIVDCQRRLTETLVCLREQRSRRIVETFLD 283 >AGl911 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 305 Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 152/278 (54%), Gaps = 1/278 (0%) Query: 8 IRSFHAVAKTRSFTAAATYLQIGQPTISEQVKALEDRFAVELLYRSGRHVELTDAGQRLY 67 +++FH VA++ F+ AA + I Q T+S V+ LE V LL R R V L+ GQRL+ Sbjct: 24 LKAFHIVAQSGGFSQAARDMAISQSTLSAHVRDLEAIGGVNLLERKPRGVSLSPQGQRLF 83 Query: 68 EITEGIFGQEDEAVQLLQSLHSQKTGLLRIGAVSPPVVMNLTYDLMHRHPGIEFAISINS 127 EIT +F E+EA L+ G LR+ A P + + + L P + F++S+++ Sbjct: 84 EITARLFQAENEATAFLRGEAGAAGGHLRVAADGPILPLPILSRLKAERPQLTFSLSVDN 143 Query: 128 EKETLSRLYDFTIDIAILAYV-DPDKRLYVIPYRTYPIVAVVRDDHAWANKASVPLKQIQ 186 + ++ D+ D+AI A D D RLY + + + + V H A + S + +++ Sbjct: 144 SARVVEQIIDYRADVAITARAPDDDPRLYGVKFLSMRLGLCVPISHPLAQRDSAFVAELE 203 Query: 187 HEAIIMRESGSKTRELLEQACSKQDIRINCVMELNSREAIMHAIAEGLGIGFVAEIEYTA 246 + +MRE GS+TRE+ E+ + I I V+E++SRE + AIA G+G G VA++E+ Sbjct: 204 DMSFVMRERGSRTREIFEKNLADHGISIQPVIEISSREGVREAIANGVGCGVVADLEFGH 263 Query: 247 IPGTKAIRLRDAQVNINYYMCALAVRKNRPLIKNVLDK 284 + L DA I+ Y LA R++ PL++ +++ Sbjct: 264 DARLAFVPLCDANELIDEYAICLAERRHLPLLRRFIEE 301 >PA1309 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 286 Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 155/277 (55%), Gaps = 1/277 (0%) Query: 8 IRSFHAVAKTRSFTAAATYLQIGQPTISEQVKALEDRFAVELLYRSGRHVELTDAGQRLY 67 +R+F AVA+ SFT AA L I QP ++ VKALE+ + V L R+ R +ELT+ G RL Sbjct: 6 LRAFDAVAREGSFTRAAERLCISQPAVTGHVKALEEHYQVTLFRRTARRIELTEEGSRLV 65 Query: 68 EITEGIFGQEDEAVQLLQSLHSQKTGLLRIGAVSPPVVMNLTYDLMHRHPGIEFAISINS 127 IT +F E+EA LL + +G L + A P +VM + L +PGI + + + Sbjct: 66 AITRTLFALEEEAEALLDANRQLVSGRLEVAADGPHLVMPMLARLRASYPGITVNLRLGN 125 Query: 128 EKETLSRLYDFTIDIAILAYVDPDKRLYVIPYRTYPIVAVVRDDHAWANK-ASVPLKQIQ 186 +ETL+ L +D+A+L V+ L++ I A++ H W + VPL+++ Sbjct: 126 AQETLAALLSEHVDVAVLTEVEARPGLFLEELVNSRICALLPRQHPWCERNEGVPLEELD 185 Query: 187 HEAIIMRESGSKTRELLEQACSKQDIRINCVMELNSREAIMHAIAEGLGIGFVAEIEYTA 246 + +++RE GS TR ++AC++Q ++ ++EL+SREA+ A+A LG+G V+ +E Sbjct: 186 QQIMVLREPGSITRRTFDRACAEQGVQPRVLLELDSREAVTEAVAAELGVGVVSSLEVGN 245 Query: 247 IPGTKAIRLRDAQVNINYYMCALAVRKNRPLIKNVLD 283 P +A+ L ++ + + L R+ +I+ L+ Sbjct: 246 DPRVRAVPLVGPELTNRHLIGCLEKRRGLRVIRAFLE 282 >SMb21535 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 289 Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 146/276 (52%) Query: 8 IRSFHAVAKTRSFTAAATYLQIGQPTISEQVKALEDRFAVELLYRSGRHVELTDAGQRLY 67 +R+FH VA F+ AA L + QP +S+QV+ LE+ + V L R+ + V LT AG +L Sbjct: 6 LRAFHNVAVCGGFSRAAEALFLTQPAVSDQVRKLEEEYDVLLFNRNKKQVTLTQAGHQLL 65 Query: 68 EITEGIFGQEDEAVQLLQSLHSQKTGLLRIGAVSPPVVMNLTYDLMHRHPGIEFAISINS 127 EIT +F E +A+ LL + + G LRI A + ++++ ++P ++ ++ + Sbjct: 66 EITRRMFDTEQQALDLLSESRALRAGTLRIVADAAHHLLHILAAFRQKYPSVQISLRAGN 125 Query: 128 EKETLSRLYDFTIDIAILAYVDPDKRLYVIPYRTYPIVAVVRDDHAWANKASVPLKQIQH 187 + ++ LY + DI +L V + ++ + PI+A +H A +++V L+++ Sbjct: 126 TETVITSLYSYEADIGVLGEVPESREFDIVKLNSTPIIAFASTEHPIARRSTVSLEELSG 185 Query: 188 EAIIMRESGSKTRELLEQACSKQDIRINCVMELNSREAIMHAIAEGLGIGFVAEIEYTAI 247 + ++MRE GSKTR+ LE + + + +E REA+ +A G G+GFV+ E+ Sbjct: 186 QPLVMRERGSKTRQKLEDFAAAAGVALKPAIEAEGREAVREIVAAGAGVGFVSAAEFGRD 245 Query: 248 PGTKAIRLRDAQVNINYYMCALAVRKNRPLIKNVLD 283 I + A++ ++ + L R L++ + Sbjct: 246 GRLAPIEIVGAEMLMDEALICLKERSGGKLVRAFFE 281 >sll1594 [K] COG0583 Transcriptional regulator Syn Synechocystis Length = 316 Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 124/236 (52%), Gaps = 2/236 (0%) Query: 8 IRSFHAVAKTRSFTAAATYLQIGQPTISEQVKALEDRFAVELLYRSGRHVELTDAGQRLY 67 ++ F A A+ SFT AA L I QPT+S Q+K L + L + G+ + LT+AGQ L Sbjct: 8 LKVFEATARHGSFTRAAEELYITQPTVSSQIKQLSKTVGLPLFEQIGKRLYLTEAGQELL 67 Query: 68 EITEGIFGQEDEAVQLLQSLHSQKTGLLRIGAVSPP--VVMNLTYDLMHRHPGIEFAISI 125 + IF + D + + K G LR+ ++ + L + + ++PGIE ++ + Sbjct: 68 VTCQDIFQRLDNFAMKVADIKGTKQGRLRLAVITTAKYFIPRLLGEFIQKYPGIEVSLKV 127 Query: 126 NSEKETLSRLYDFTIDIAILAYVDPDKRLYVIPYRTYPIVAVVRDDHAWANKASVPLKQI 185 + ++ R+ + D+ I++ + L P+ P+V + R DH A K+++P+ + Sbjct: 128 TNHEQIRHRMQNNEDDLYIVSEPPEEIDLNYQPFLDNPLVVIARRDHPLAGKSNIPITAL 187 Query: 186 QHEAIIMRESGSKTRELLEQACSKQDIRINCVMELNSREAIMHAIAEGLGIGFVAE 241 EA IMRE GS TR ++ + + + +EL S EAI AIA G+GI +++ Sbjct: 188 NDEAFIMREKGSGTRLAVQNLFHRHYVDVRVRLELGSNEAIKQAIAGGMGISVLSQ 243