BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0348.p (266 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc1276 [K] COG1414 Transcriptional regulator Atu Agrobacterium ... 137 2e-32 SMc00879 [K] COG1414 Transcriptional regulator Sme Sinorhizobium... 135 1e-31 BH2137 [K] COG1414 Transcriptional regulator Bha Bacillus halodu... 133 4e-31 TM0065 [K] COG1414 Transcriptional regulator Tma Thermotoga mari... 124 2e-28 Z2874 [K] COG1414 Transcriptional regulator EcZ Escherichia coli... 122 6e-28 >AGc1276 [K] COG1414 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 298 Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 17 TAAFSKFMVVLQLIADQDEPLSIARLSALSGYPRPTVYRILAALTAEGMVVENPRTRHFE 76 T K + +L+LIA ++P+ + SG PR TV+R LA L AEG+V ++ + + Sbjct: 45 TGTLGKVVSLLELIALAEKPMRFTDVVEASGQPRGTVHRQLAHLVAEGLV-DHAADQTYA 103 Query: 77 LGPRLINLASKSWSRSDVRTAAIDALQQLRDTTRETVHLAVPSDNGMVYIEKLESPQAVR 136 +G RL+ LA+K+WS +D+R A L L++ T+E+VHLAV + + Y++K+E +R Sbjct: 104 VGLRLLQLAAKAWSGNDLRNVAAPHLSALQEATQESVHLAVLNGGQVTYLDKMEGRHTLR 163 Query: 137 MTSRVGTRVTLYSSSVGKAYLAALDEATRNRLLRSVRMQKFTEHTITDLDVLRAELAVAQ 196 M S+VG Y + VGKA L+ L L + +FTE T+ + L A++A Sbjct: 164 MHSQVGKTSPAYCTGVGKAALSLLPVDELAELAAGMEFHRFTEATLITPEALMADVAAIC 223 Query: 197 QRGYTEDREENEAQIFCVGAPIFGAEGTPVACISVSIPLFRKPAQ 241 GY D +E+E I CV AP+ VA ISV+ P +R A+ Sbjct: 224 DNGYGFDLQEHEIGIHCVAAPVRARGRNFVAAISVTGPAYRVDAE 268 >SMc00879 [K] COG1414 Transcriptional regulator Sme Sinorhizobium meliloti Length = 284 Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 132/261 (50%), Gaps = 6/261 (2%) Query: 9 EDNPKIAGTAAFSKFMVVLQLIADQDEPLSIARLSALSGYPRPTVYRILAALTAEGMVVE 68 E +P AGT K M VL+ +A D P + PR T++R+L L EG++V+ Sbjct: 10 EGDP--AGTGTLGKAMAVLEAVAMADRPQRFTDILQTVRQPRGTLHRLLGHLVEEGLLVQ 67 Query: 69 NPRTRHFELGPRLINLASKSWSRSDVRTAAIDALQQLRDTTRETVHLAVPSDNGMVYIEK 128 R +E G RL+ A +SWS + R A L L T ETVHL + + ++Y++K Sbjct: 68 R-RDLSYEPGLRLLKFAYRSWSGNRFREIAAPYLLHLHQLTGETVHLGLLREAEIIYVDK 126 Query: 129 LESPQAVRMTSRVGTRVTLYSSSVGKAYLAALDEATRNRLLRSVRMQKFTEHTITDLDVL 188 +ES Q VRM+S++G Y + +GKA L+ L R+ + FT T ++ L Sbjct: 127 VESRQTVRMSSQIGKASPAYCTGIGKAALSVLPGGELQRISTGMEFHPFTAQTHRSIESL 186 Query: 189 RAELAVAQQRGYTEDREENEAQIFCVGAPIFGAEGTPVACISVSIPLFRKPAQLQQALID 248 AE+ + G+ DREE+EA+I CV API E V ISV+ P +R + A Sbjct: 187 LAEIEEIRHDGHAFDREEHEAEICCVAAPISVPEHDLVGGISVTGPSYRVSFKQLTAWAQ 246 Query: 249 PLLSTCKLITQKLS---GPGR 266 + I +++ GPGR Sbjct: 247 DVRKVAAEIEEEVRIRLGPGR 267 >BH2137 [K] COG1414 Transcriptional regulator Bha Bacillus halodurans Length = 251 Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 125/239 (52%) Query: 24 MVVLQLIADQDEPLSIARLSALSGYPRPTVYRILAALTAEGMVVENPRTRHFELGPRLIN 83 + ++ L+++ + L + ++A + + Y++LA L G + ++ T+ + LG R + Sbjct: 9 LTIISLVSEHKQGLGVTDVAAKLSLTKSSAYKLLATLVEHGFIEQDEETKKYRLGYRYLE 68 Query: 84 LASKSWSRSDVRTAAIDALQQLRDTTRETVHLAVPSDNGMVYIEKLESPQAVRMTSRVGT 143 L++ D+R A L+QL TT E VHL + MVYI+KLE + +R S++G Sbjct: 69 LSATLLESIDIRRQARPFLEQLEATTNEVVHLVLYDQGEMVYIDKLEGTKTLRTHSKIGR 128 Query: 144 RVTLYSSSVGKAYLAALDEATRNRLLRSVRMQKFTEHTITDLDVLRAELAVAQQRGYTED 203 R ++ +SVGK +A L E + L+ + TE TITD + EL + GY + Sbjct: 129 RAPIHCTSVGKVIMAYLPEKVQISLIERYGLPPHTERTITDKETFMKELEKIRLEGYGYE 188 Query: 204 REENEAQIFCVGAPIFGAEGTPVACISVSIPLFRKPAQLQQALIDPLLSTCKLITQKLS 262 EENE I C+ APIF +G A +S+S P R + L +++ K I+Q+L Sbjct: 189 MEENEPGITCIAAPIFDYQGAITAAVSISGPSIRLSKERLHELRPLIIAIGKKISQRLG 247 >TM0065 [K] COG1414 Transcriptional regulator Tma Thermotoga maritima Length = 246 Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 109/207 (52%), Gaps = 1/207 (0%) Query: 26 VLQLIADQDEPLSIARLSALSGYPRPTVYRILAALTAEGMVVENPRTRHFELGPRLINLA 85 +L I +S++ ++ Y+ + L +G V+ R+ G +LI Sbjct: 10 ILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVP-GYKLIEYG 68 Query: 86 SKSWSRSDVRTAAIDALQQLRDTTRETVHLAVPSDNGMVYIEKLESPQAVRMTSRVGTRV 145 S R ++R A D L + T ETVHL + VYI+K+E Q++ M SR+G +V Sbjct: 69 SFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKDGFEGVYIDKVEGEQSIPMVSRLGMKV 128 Query: 146 TLYSSSVGKAYLAALDEATRNRLLRSVRMQKFTEHTITDLDVLRAELAVAQQRGYTEDRE 205 LYS++ GK+ LA + E L+ V ++ T +TIT+ VL+ EL ++RGY D E Sbjct: 129 DLYSTASGKSILAFVPEKELKEYLKIVELKPKTPNTITNPRVLKRELEKIRKRGYAVDNE 188 Query: 206 ENEAQIFCVGAPIFGAEGTPVACISVS 232 ENE I CVG PIF G PVA +S+S Sbjct: 189 ENEIGIMCVGVPIFDHNGYPVAGVSIS 215 >Z2874 [K] COG1414 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 263 Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 124/240 (51%), Gaps = 1/240 (0%) Query: 22 KFMVVLQLIADQDEPLSIARLSALSGYPRPTVYRILAALTAEGMVVENPRTRHFELGPRL 81 K +LQ + ++ E + I LS + TVYR L + G V + + + L +L Sbjct: 18 KVFGILQALGEERE-IGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKL 76 Query: 82 INLASKSWSRSDVRTAAIDALQQLRDTTRETVHLAVPSDNGMVYIEKLESPQAVRMTSRV 141 L +++ D+ +A ++++ T+ET+HL +B +VYI K++S +RM SR+ Sbjct: 77 FELGARALQNVDLIRSADIQMREISRLTKETIHLGALDEBSIVYIHKIDSMYNLRMYSRI 136 Query: 142 GTRVTLYSSSVGKAYLAALDEATRNRLLRSVRMQKFTEHTITDLDVLRAELAVAQQRGYT 201 G R LYS+++GK LA D ++L V ++ TE TIT + L L +++GY Sbjct: 137 GRRNPLYSTAIGKVLLAWRDRDEVKQILEGVEYKRSTERTITSTEALLPVLDQVREQGYG 196 Query: 202 EDREENEAQIFCVGAPIFGAEGTPVACISVSIPLFRKPAQLQQALIDPLLSTCKLITQKL 261 ED EE E + C+ P+F G +A +S+S P R + Q + L + + I+ ++ Sbjct: 197 EDNEEQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFSEERLQEYVAMLHTAARKISAQM 256