BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0340.p (205 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PM1268 [D] COG0424 Nucleotide-binding protein implicated in inhi... 177 2e-44 RSc2196 [D] COG0424 Nucleotide-binding protein implicated in inh... 166 4e-41 NMA0802 [D] COG0424 Nucleotide-binding protein implicated in inh... 161 8e-40 NMB0598 [D] COG0424 Nucleotide-binding protein implicated in inh... 155 4e-38 yhdE [D] COG0424 Nucleotide-binding protein implicated in inhibi... 154 1e-37 >PM1268 [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation Pmu Pasteurella multocida Length = 200 Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 93/202 (46%), Positives = 129/202 (63%), Gaps = 6/202 (2%) Query: 3 LADKKIYLASKSPRRRELLRQIGIDFELLLNDKEVDEQVLPNEKPADYVARVTRDKLLSA 62 + D + YLAS SPRR ++L+Q+G F L E+DE LP+EK ADYV R+ +K +A Sbjct: 1 MTDFQFYLASNSPRRAQILQQLGFRFALCCC--EIDETPLPDEKGADYVLRMAIEKNNAA 58 Query: 63 RQ----TMLYRQLPMRPILSADTTVVVDDLILGKPADVREAVEMITRLSGRTHQVLTSVA 118 RQ + P P LSADT+V+++D ILGKP + +A M+ LS RTHQV+T+V Sbjct: 59 RQQWQQAKFSQNRPHLPFLSADTSVILEDKILGKPKNEADARAMLRALSARTHQVITAVC 118 Query: 119 VAFQEQMWQITQYSDVAFEALSDDMIRAYCSTQEPFDKAGGYGIQGLASIFIKDIAGSHS 178 VA + QM + Q S V F+ L++ I+ Y +T EP DKAG YGIQ L +F++ I GS S Sbjct: 119 VADENQMQTVIQTSHVRFKVLTEKEIQGYIATGEPMDKAGAYGIQQLGGVFVEHIEGSFS 178 Query: 179 GIMGLPLFETAQLLQKTGMRIL 200 G+MGLP+ ET LL+ G+ + Sbjct: 179 GVMGLPVCETVALLKAFGVELF 200 >RSc2196 [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation Rso Ralstonia solanacearum Length = 207 Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 100/198 (50%), Positives = 126/198 (63%), Gaps = 5/198 (2%) Query: 7 KIYLASKSPRRRELLRQIGIDFELLLNDKEVD----EQVLPNEKPADYVARVTRDKLLSA 62 +YLAS+SPRR+ELLRQIG+ FELLL D + D E VL E P DYV RV K +A Sbjct: 10 HLYLASQSPRRQELLRQIGVRFELLLADGDEDAEALEAVLLGETPDDYVQRVCALKAQAA 69 Query: 63 RQTMLYRQLPMRPILSADTTVVVDDLILGKPADVREAVEMITRLSGRTHQVLTSVAVAFQ 122 + R LP RPIL++DTTV + ILGKPAD +A M+ +SGR H+VLT+V V Sbjct: 70 ARRRAARGLPARPILTSDTTVCLGGEILGKPADAADAHRMLRGMSGREHRVLTAVTVVTA 129 Query: 123 EQM-WQITQYSDVAFEALSDDMIRAYCSTQEPFDKAGGYGIQGLASIFIKDIAGSHSGIM 181 + S V F L+D I Y ++ EPF KAG YGIQG A+ F+ I+GS+SGIM Sbjct: 130 DGTPMHALSVSQVRFAVLTDVDIARYIASGEPFGKAGAYGIQGRAAAFVAHISGSYSGIM 189 Query: 182 GLPLFETAQLLQKTGMRI 199 GLPLFETA LL + + + Sbjct: 190 GLPLFETAALLAQAAITL 207 >NMA0802 [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation NmA Neisseria meningitidis Z2491 Length = 201 Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 85/198 (42%), Positives = 118/198 (59%), Gaps = 4/198 (2%) Query: 6 KKIYLASKSPRRRELLRQIGIDFELLLNDKEVDEQVLPNEKPADYVARVTRDKLLSARQT 65 +YL S SPRR E+L Q+G ++++ +DE V NE PA YV R+ +K +A Sbjct: 2 NTLYLGSNSPRRMEILTQLG--YQVVKLPANIDETVRQNEDPARYVQRMAEEKNRTALTL 59 Query: 66 MLYRQ--LPMRPILSADTTVVVDDLILGKPADVREAVEMITRLSGRTHQVLTSVAVAFQE 123 +P P+++ADT VV +ILGKP EA+E + RLSG+ H VLT+V + ++ Sbjct: 60 FCETNGTMPDFPLITADTCVVSAGIILGKPHSQAEAIEFLNRLSGKQHTVLTAVCIHYRG 119 Query: 124 QMWQITQYSDVAFEALSDDMIRAYCSTQEPFDKAGGYGIQGLASIFIKDIAGSHSGIMGL 183 Q + V F+ LS + I AY + EP DKAG Y +QG+ SIFI+ I GS SGIMGL Sbjct: 120 NAENRVQTNRVVFKPLSSEEISAYVQSGEPMDKAGAYAVQGIGSIFIQSIEGSFSGIMGL 179 Query: 184 PLFETAQLLQKTGMRILP 201 P++ET +LQ G R P Sbjct: 180 PVYETVSMLQDLGYRTPP 197 >NMB0598 [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation Nme Neisseria meningitidis MC58 Length = 202 Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 82/193 (42%), Positives = 115/193 (59%), Gaps = 4/193 (2%) Query: 8 IYLASKSPRRRELLRQIGIDFELLLNDKEVDEQVLPNEKPADYVARVTRDKLLSARQTML 67 +YL S SPRR E+L Q+G + ++ +DE V E P YV R+ +K +A Sbjct: 4 LYLGSNSPRRMEILTQLG--YRVIQLPAGIDESVKAGETPFAYVQRMAEEKNRTALTLFC 61 Query: 68 YRQ--LPMRPILSADTTVVVDDLILGKPADVREAVEMITRLSGRTHQVLTSVAVAFQEQM 125 +P P+++ADT VV D +ILGKP EA+E + RLSG+ H VLT+V + ++ + Sbjct: 62 ETNGTMPDFPLITADTCVVSDGIILGKPRSQAEAIEFLNRLSGKQHTVLTAVCIHYRGKT 121 Query: 126 WQITQYSDVAFEALSDDMIRAYCSTQEPFDKAGGYGIQGLASIFIKDIAGSHSGIMGLPL 185 Q + V F+ LS + I AY + EP DKAG Y +QG+ IFI+ I GS SGIMGLP+ Sbjct: 122 SSRVQTNRVVFKPLSSEEISAYVQSGEPMDKAGAYAVQGIGGIFIQSIEGSFSGIMGLPV 181 Query: 186 FETAQLLQKTGMR 198 +ET +LQ G R Sbjct: 182 YETVSMLQDLGYR 194 >yhdE [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation Eco Escherichia coli K12 Length = 197 Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 6/187 (3%) Query: 8 IYLASKSPRRRELLRQIGIDFELLLNDKEVDEQVLPNEKPADYVARVTRDKLLSARQTML 67 +YLAS SPRR+ELL Q+G+ FE ++ ++EQ P E YV R+ R+K AR + Sbjct: 4 LYLASGSPRRQELLAQLGVTFERIVTG--IEEQRQPQESAQQYVVRLAREK---ARAGVA 58 Query: 68 YRQLPMRPILSADTTVVVDDLILGKPADVREAVEMITRLSGRTHQVLTSVAVAFQEQMWQ 127 + P+L ADT V+++ +L KP D A +M+ +LSG+THQV+T+VA+A + + Sbjct: 59 QTAKDL-PVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQVMTAVALADSQHILD 117 Query: 128 ITQYSDVAFEALSDDMIRAYCSTQEPFDKAGGYGIQGLASIFIKDIAGSHSGIMGLPLFE 187 +DV F L+D+ I Y ++ EP DKAG YGIQGL F++ I GS+ ++GLPL E Sbjct: 118 CLVVTDVTFRTLTDEDIAGYVASDEPLDKAGAYGIQGLGGCFVRKINGSYHAVVGLPLVE 177 Query: 188 TAQLLQK 194 T +LL Sbjct: 178 TYELLSN 184