BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0328.p         (581 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2187 [GER] COG0697 Permeases of the drug/metabolite transport...   318   1e-86
RSc2184 [CR] COG0604 NADPH Rso Ralstonia solanacearum                 218   4e-56
SMc00246 [CR] COG0604 NADPH Sme Sinorhizobium meliloti                197   4e-50
mll0505 [CR] COG0604 NADPH Mlo Mesorhizobium loti                     190   8e-48
PA0023 [CR] COG0604 NADPH Pae Pseudomonas aeruginosa                  182   3e-45

>RSc2187 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Rso Ralstonia solanacearum
          Length = 308

 Score =  318 bits (816), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 160/253 (63%), Positives = 204/253 (80%), Gaps = 1/253 (0%)

Query: 2   SSTALSPSISPRRAYLGGLLLAVVGAIFFSAKAIVAKLMYRYHVDAVMVISLRMMFSLPM 61
           ++++ SP+ S R A  GGLLLA VGA+ FSAKAIVAKLMYRY +DAVMVI+LRM+ + P+
Sbjct: 3   TASSASPA-STRPADAGGLLLASVGAVLFSAKAIVAKLMYRYQIDAVMVITLRMLLAAPL 61

Query: 62  FAVLAFWQARNSPPLAGRDYAKIAFLGLIGYYLSSFLDFLGLQYISAGLERLILFLTPSF 121
           F  + +WQ+R + PLA  D  +I  LGLIGYYLSSFLDFLGLQYI+AGLERLILFLTPSF
Sbjct: 62  FMAMGWWQSRRAAPLAPADRWRIVGLGLIGYYLSSFLDFLGLQYITAGLERLILFLTPSF 121

Query: 122 VLLISFTFYKRKVGLIEWGALLVSYLGTALVLQHDINTGGNNVVLGSVLVLGAAITYALY 181
           VLLI+ T +KR++  ++W ++ ++Y G  +V  HD+  GG +V LG  LVL +A++Y +Y
Sbjct: 122 VLLITATVFKRRITGLQWLSMAIAYAGIVMVFAHDLGLGGRHVWLGGGLVLASALSYGIY 181

Query: 182 LIFSGELVRRVGAMRLVAYAMCVSSVACIIQFFILRPASALVQPVQVYQLSLINAVFCTV 241
           L+ SGELVRRVG+MRLVAYAMCVS+VAC++QFF+LRP SALV P QVY LS IN+VFCTV
Sbjct: 182 LLASGELVRRVGSMRLVAYAMCVSTVACMVQFFVLRPVSALVLPWQVYGLSAINSVFCTV 241

Query: 242 LPVCLTMVAVSRI 254
            PV LTM+AV+R+
Sbjct: 242 APVTLTMMAVARV 254


>RSc2184 [CR] COG0604 NADPH Rso Ralstonia solanacearum
          Length = 324

 Score =  218 bits (554), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 123/158 (77%)

Query: 424 VIGTVSTDEKAALAKAAGCTHVINYKTENFVERVKELTNGKGVPVVYDSIGKDTFIGSLD 483
           VIGTV +D KAALA+A GC H I Y  ENF ERV+E+T GKGVPVVYD IGKDTF GSLD
Sbjct: 167 VIGTVGSDAKAALARAHGCDHTIVYTRENFTERVREITGGKGVPVVYDGIGKDTFSGSLD 226

Query: 484 CLSPRGMMVSFGNASGPVSPFGVSELASRGSLFLTRPSLGNYVATREALNATAGDLFAMV 543
           CL+PRGMMVS+GNASGPV PF +  L+++GSL LTRP+L  Y A R  L   A +LF +V
Sbjct: 227 CLAPRGMMVSYGNASGPVPPFDLGVLSAKGSLKLTRPTLMTYTAQRALLEPMAAELFDVV 286

Query: 544 EAKKVNIDINQRYALKDVGQAHADLEARKTTGSTILIP 581
            + KV I+I+QRYAL D  QAH DLEARKTTGSTIL+P
Sbjct: 287 GSGKVKIEIHQRYALADAAQAHRDLEARKTTGSTILLP 324


>SMc00246 [CR] COG0604 NADPH Sme Sinorhizobium meliloti
          Length = 325

 Score =  197 bits (502), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 119/158 (75%)

Query: 424 VIGTVSTDEKAALAKAAGCTHVINYKTENFVERVKELTNGKGVPVVYDSIGKDTFIGSLD 483
           VIGT  + EK  LA A G  HVINY+T+NFVERVK+LT G+GV VVYDS+G+DT+  SLD
Sbjct: 168 VIGTAGSQEKIDLALAHGYDHVINYRTDNFVERVKDLTGGRGVDVVYDSVGRDTYPASLD 227

Query: 484 CLSPRGMMVSFGNASGPVSPFGVSELASRGSLFLTRPSLGNYVATREALNATAGDLFAMV 543
           CL PRG+  SFGN+SGPV  F +  LA +G+L+ TRP+L  YVATR AL A A  LF +V
Sbjct: 228 CLKPRGLWASFGNSSGPVDAFNIGILAQKGALYATRPTLFTYVATRPALEACANSLFDVV 287

Query: 544 EAKKVNIDINQRYALKDVGQAHADLEARKTTGSTILIP 581
           ++ KV I+INQ Y L + G+AH DLE RKT+G+T+LIP
Sbjct: 288 QSNKVRININQTYPLAEAGRAHTDLETRKTSGTTLLIP 325


>mll0505 [CR] COG0604 NADPH Mlo Mesorhizobium loti
          Length = 325

 Score =  190 bits (483), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 96/158 (60%), Positives = 115/158 (72%)

Query: 424 VIGTVSTDEKAALAKAAGCTHVINYKTENFVERVKELTNGKGVPVVYDSIGKDTFIGSLD 483
           VIGT S+ +K  LAKA G  HVINY+ ++FV  V  +T GK   VVYDS+G DTF  SLD
Sbjct: 168 VIGTASSTDKIELAKAHGFDHVINYREQDFVAGVAAITGGKKCDVVYDSVGNDTFPASLD 227

Query: 484 CLSPRGMMVSFGNASGPVSPFGVSELASRGSLFLTRPSLGNYVATREALNATAGDLFAMV 543
           CL P GM VSFG +SGP+ PF +S LA +GSLF TRP+L  Y A RE L+A+A  LF +V
Sbjct: 228 CLKPLGMFVSFGQSSGPIPPFSMSLLAQKGSLFATRPTLFVYNAKREDLDASAAALFDVV 287

Query: 544 EAKKVNIDINQRYALKDVGQAHADLEARKTTGSTILIP 581
            +  V I INQRYALKD G+AHADLE R+TTG+TILIP
Sbjct: 288 LSGAVKIQINQRYALKDAGKAHADLEGRRTTGTTILIP 325


>PA0023 [CR] COG0604 NADPH Pae Pseudomonas aeruginosa
          Length = 325

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 117/158 (74%)

Query: 424 VIGTVSTDEKAALAKAAGCTHVINYKTENFVERVKELTNGKGVPVVYDSIGKDTFIGSLD 483
           +IGTVS+ EKA LA+  G    I+Y  EN   RV ELT+GK  PVVYDS+GKDT+  SLD
Sbjct: 168 LIGTVSSPEKARLARQHGAWETIDYSHENVARRVLELTDGKKCPVVYDSVGKDTWETSLD 227

Query: 484 CLSPRGMMVSFGNASGPVSPFGVSELASRGSLFLTRPSLGNYVATREALNATAGDLFAMV 543
           C++PRG++VSFGNASGPV+   +  L+ +GSL++TRP+LG+Y  T E L A A +LF ++
Sbjct: 228 CVAPRGLLVSFGNASGPVTGVNLGILSQKGSLYVTRPTLGSYADTPEKLQAMADELFGLI 287

Query: 544 EAKKVNIDINQRYALKDVGQAHADLEARKTTGSTILIP 581
           E   + I+INQR+AL +  +AH +L AR+TTGST+L+P
Sbjct: 288 ERGDIRIEINQRFALAEAARAHTELAARRTTGSTVLLP 325