BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0294.p (457 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 194 5e-49 PA2495 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 190 8e-48 AGc4622 [MU] COG1538 Outer membrane protein Atu Agrobacterium tu... 167 5e-41 RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 161 4e-39 PA4208 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 159 1e-38 >PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 479 Score = 194 bits (492), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 211/435 (48%), Gaps = 18/435 (4%) Query: 21 RWWEALGDPVLNDLVQRALDANPNLGIARAXALDANPNLGIARAALNLEQANALPSVGAS 80 +WW D LN L+QR AN +L A A L +RA +ALPSV AS Sbjct: 54 QWWTLFDDAQLNALLQRVQRANLDLRSAAA-------RLQQSRAIRRSLGGDALPSVDAS 106 Query: 81 ALAGHARLPPINLGSSSGASTSSGSSTSLNLYSLGFDATWEADLFGGHRRAVQAANATAE 140 R L SG + + +L GFDA+WE D +G RR ++AA+AT E Sbjct: 107 GNYQRQRTTSAGLFDPSGKAGKGNYNHALA----GFDASWELDFWGRVRRELEAADATVE 162 Query: 141 AAEASLADVQVSLEAEVANAYINLRDRQRRIRLADESIRAQEQMATLTQQRLERGTASNL 200 A+E L DVQVS+ AE A YI LR Q R + +++ + LT+ RL G A++L Sbjct: 163 ASENELRDVQVSVLAEAARDYIQLRGEQNRAAIIRDNLETARRSLELTRTRLANGVATDL 222 Query: 201 DLIRVRNQLDGTRSDQVPLQADLESYLNQLATLVGQEPGTLDEMLVANANAENAENAVPL 260 ++ + Q+ + ++ + +N L LVG PG+L L A+P Sbjct: 223 EVAQALAQVASMEARLPEVEKNQAHLVNALGYLVGASPGSLLAEL-------GPARAIPR 275 Query: 261 PPAQVAAGDPQALLRRRPDIRAAERTLAADTAKIGQAEAARYPSLKLFGVIGLGGTHPSD 320 PP V G P L +RRPDIR AE L A TA IG A+A YP + L G G S Sbjct: 276 PPGSVPVGLPSELAQRRPDIRRAEARLHAATASIGVAKADFYPRITLNGNFGFESLQLSS 335 Query: 321 LTKLDDFTAVAAPMLSWNFLDFGRAKARVTQAERVRDEAEIKYRQSVLEALRDAEDSLSR 380 L D P S + GR + R+ E + EA I Y+++VL A ++ +D++ Sbjct: 336 LGDWDHRQFAIGPAFSLPIFEGGRLRGRLELREAQQQEAAIDYQRTVLRAWQEVDDAMHD 395 Query: 381 FRYGRVTVATVARTKASADRALDLAQQRYRAGTGTLIDVLDTTRQQLSAQQNLSQAEAAL 440 + + + A RAL A+++YRAG + VLD+ RQ L Q+ ++ A+ Sbjct: 396 YAANQRRQERLGEAVAQNRRALQSAREQYRAGAVDFLSVLDSQRQLLDNQEQQVASDEAV 455 Query: 441 TRSFVGIQKALGLGW 455 + + V + KALG GW Sbjct: 456 SLTLVNLYKALGGGW 470 >PA2495 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 472 Score = 190 bits (482), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 155/450 (34%), Positives = 227/450 (50%), Gaps = 32/450 (7%) Query: 13 ASAEAPVNR------WWEALGDPVLNDLVQRALDANPNLGIARAXALDANPNLGIARAAL 66 A+A P +R WW+ DP LN LV+++L N +L +A A A Sbjct: 44 ATASKPYDRSRFESLWWKQFDDPTLNQLVEQSLSGNRDLRVAFARLRAARALRD------ 97 Query: 67 NLEQAN-ALPSVGASALAGHARLPPINLGSSSGASTSSGSSTSLNLYSLGFDATWEADLF 125 + AN P V + A A I G G + +S Y LG D+ WE DLF Sbjct: 98 --DVANDRFPVVTSRASAD------IGKGQQPGVTEDRVNSER---YDLGLDSAWELDLF 146 Query: 126 GGHRRAVQAANATAEAAEASLADVQVSLEAEVANAYINLRDRQRRIRLADESIRAQEQMA 185 G RR +++++A +EAAEA L +QVSL AE+ +AY LR Q R ++A ++ Q++ Sbjct: 147 GRIRRQLESSDALSEAAEADLQQLQVSLIAELVDAYGQLRGAQLREKIALSNLENQKESR 206 Query: 186 TLTQQRLERGTASNLDLIRVRNQLDGTRSDQVPLQADLESYLNQLATLVGQEPGTLDEML 245 LT+Q + G + LD++R +L T + LQA+ E +++ATL+GQ P E L Sbjct: 207 QLTEQLRDAGVGAELDVLRADARLAATAASVPQLQAEAERARHRIATLLGQRP----EEL 262 Query: 246 VANANAENAENAVPLPPAQVAAGDPQALLRRRPDIRAAERTLAADTAKIGQAEAARYPSL 305 + + + +P + GDP LLRRRPDIRAAER LAA TA +G A A +P + Sbjct: 263 TVDLSPRD----LPAITKALPIGDPGELLRRRPDIRAAERRLAASTADVGVATADLFPRV 318 Query: 306 KLFGVIGLGGTHPSDLTKLDDFTAVAAPMLSWNFLDFGRAKARVTQAERVRDEAEIKYRQ 365 L G +G S + P +SW D G +AR+ A+ D A Y Q Sbjct: 319 SLSGFLGFTAGRGSQIGSSAARAWSVGPSISWAAFDLGSVRARLRGAKADADAALASYEQ 378 Query: 366 SVLEALRDAEDSLSRFRYGRVTVATVARTKASADRALDLAQQRYRAGTGTLIDVLDTTRQ 425 VL AL ++ ++ S + + + ++ R ++ A A RYR GT + +LD R+ Sbjct: 379 QVLLALEESANAFSDYGKRQERLVSLVRQSEASRAAAQQAAIRYREGTTDFLVLLDAERE 438 Query: 426 QLSAQQNLSQAEAALTRSFVGIQKALGLGW 455 QLSA+ +QAE L R V I ++LG GW Sbjct: 439 QLSAEDAQAQAEVELYRGIVAIYRSLGGGW 468 >AGc4622 [MU] COG1538 Outer membrane protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 513 Score = 167 bits (423), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 140/453 (30%), Positives = 222/453 (49%), Gaps = 25/453 (5%) Query: 4 GRFVRAQDAASAEAPVNRWWEALGDPVLNDLVQRALDANPNLGIARAXALDANPNLGIAR 63 G+F A ++ + WW A D LN V L N + L A + A+ Sbjct: 62 GKFAEAGKTSNGDISTVAWWNAFNDSRLNGYVSTGLTQNLTV-------LQAIERINQAQ 114 Query: 64 AALNLEQANALPSVGASALAGHARLPPINLGSSSGASTSSGSSTSLNLYSLGFDATWEAD 123 + + + A +LPS+ ++ + SG S S + N S F+ W D Sbjct: 115 SNITVAGAGSLPSLTSTFR---------HQTQGSGGSLPSTNDNVTNTTSNAFNVGWLLD 165 Query: 124 LFGGHRRAVQAANATAEAAEASLADVQ-VSLEAEVANAYINLRDRQRRIRLADESIRAQE 182 LFG +RRA ++A A+ +AA A+ A+VQ ++L + V +AYI++R Q R+ +A +++ ++ Sbjct: 166 LFGQYRRAQESAGASLDAAYAT-ANVQRLTLISAVTSAYIDVRYYQERLAIARQNLGSRR 224 Query: 183 QMATLTQQRLERGTASNLDLIRVRNQLDGTRSDQVPLQADLESYLNQLATLVGQEPGTLD 242 + +LT+ +L+ G AS LD+++ ++ T + L+ + +++ATL+G +L Sbjct: 225 ETLSLTKLQLDAGAASRLDVVQSEGLVNSTLAQMPALETNFRRAAHRIATLLGMPADSLV 284 Query: 243 EMLVANANAENAENAVPLPPAQVAAGDPQALLRRRPDIRAAERTLAADTAKIGQAEAARY 302 L A A +P G P L+R RPDIR AER LAA A IG AEA Y Sbjct: 285 MELQRGARQPVART-IP------RTGIPADLIRNRPDIRVAERQLAAAVADIGVAEAQLY 337 Query: 303 PSLKLFGVIGLGGTHPSDLTKLDDFTAVAAPMLSWNFLDFGRAKARVTQAERVRDEAEIK 362 PS+ L G I T S+ P ++ LD GR +A V + V E + Sbjct: 338 PSITLSGSITPSFTKISNGASGTSNGWGFGPSITLPILDGGRLRAGVDIQKSVAREQYLA 397 Query: 363 YRQSVLEALRDAEDSLSRFRYGRVTVATVARTKASADRALDLAQQRYRAGTGTLIDVLDT 422 ++ +VL A+ + E++L+ + TV+ RT +S AL LA YR G +L+DVLD Sbjct: 398 WKATVLNAVEEVENALTALNRDQQTVSAYRRTVSSYQEALSLATASYRDGASSLLDVLDA 457 Query: 423 TRQQLSAQQNLSQAEAALTRSFVGIQKALGLGW 455 R AQ L+ A + +V + ALG G+ Sbjct: 458 QRNVSDAQSQLATAIQQAAQDYVALSVALGGGY 490 >RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 508 Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 142/440 (32%), Positives = 210/440 (47%), Gaps = 24/440 (5%) Query: 21 RWWEALGDPVLNDLVQRALDANPNLGIARAXALDANPNLGIARAALNLEQANALPSVGAS 80 +WWE GD LN L ++ AN N+ +A A A + ARA P++ AS Sbjct: 66 KWWEIFGDAQLNALEEQVAAANQNILVAEAQYRQAQALVQSARAQF-------FPTISAS 118 Query: 81 ALAGHARLPPINLGSSSGASTSSGSSTSLNLYSLGFDATWEADLFGGHRRAVQAANATAE 140 A A +R + +++ S S+GS + N SL DA+WE DL+G RR V++ A+AE Sbjct: 119 ASASRSRS--VRTTTNADGSLSTGSPSITNTQSLTLDASWELDLWGRIRRTVESNKASAE 176 Query: 141 AAEASLADVQVSLEAEVANAYINLRDRQRRIRLADESIRAQEQMATLTQQRLERGTASNL 200 A+ LA +S +A +A Y LR + + ++ E+ LTQ + G A Sbjct: 177 ASAGDLASALLSAQATLAQDYFQLRVTDTQKAVLRRTVADYERFLQLTQNQYAVGVAQRS 236 Query: 201 DLIRVRNQLDGTRS---DQVPLQADLESYLNQLATLVGQEPGTLDEMLVANANAENAENA 257 D++ + QL T++ D +A LE + +A L+G+ P +A +A A+ Sbjct: 237 DVLTAQTQLKQTQALLLDAEVTRAQLE---HAIAVLIGKSPSAFS---LAPVSAATAQEL 290 Query: 258 VPLP--PAQVAAGDPQALLRRRPDIRAAERTLAADTAKIGQAEAARYPSLKLFGVIGLGG 315 PLP P ++ P +L RRPDI AAER +A A IG A+AA +P+L L GL Sbjct: 291 PPLPDIPLEI----PSTVLERRPDIAAAERRVAQANANIGVAKAAYFPTLTLGASAGLSA 346 Query: 316 THPSDLTKLDDFTAVAAPMLSWNFLDFGRAKARVTQAERVRDEAEIKYRQSVLEALRDAE 375 S L L P L+ + G A V +A D A YRQ+VL A +D E Sbjct: 347 NTLSRLATLPSRIWSIGPTLAATLFEGGALNAAVNKAGAAYDAAVGTYRQTVLGAFQDVE 406 Query: 376 DSLSRFRYGRVTVATVARTKASADRALDLAQQRYRAGTGTLIDVLDTTRQQLSAQQNLSQ 435 D+L+ R+ SA A L RYRAGT + ++V+ +A++ L Sbjct: 407 DNLAALRWQAQEFDVQNDAVQSAQEAAQLDLNRYRAGTISFLEVITAQATAYTAERTLLT 466 Query: 436 AEAALTRSFVGIQKALGLGW 455 + + V + KALG GW Sbjct: 467 LQGKRYSAAVLLVKALGGGW 486 >PA4208 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 487 Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 149/442 (33%), Positives = 216/442 (48%), Gaps = 28/442 (6%) Query: 16 EAPVNRWWEALGDPVLNDLVQRALDANPNLGIARAXALDANPNLGIARAALNLEQANALP 75 EAP WW DP L LV +AL N ++ ARA NL ARA + + LP Sbjct: 54 EAP---WWSFFDDPQLVRLVDQALARNHDIREARA-------NLRSARALFDDRWLDQLP 103 Query: 76 SVGASALAGHARLPPINLGSSSGASTSSGSSTSLNLYSLGFDATWEADLFGGHRRAVQAA 135 V ++ AG++R L S Y GFDA WE DLFG R AA Sbjct: 104 QV--TSQAGYSRSIEQQLDYDGEPRRRLAES-----YRAGFDAQWEIDLFGRLGRLSDAA 156 Query: 136 NATAEAAEASLADVQVSLEAEVANAYINLRDRQRRIRLADESIRAQEQMATLTQQRLERG 195 A AEAA+A L V++S+ A+ A AY ++ QRR+ +A +R+ LT+ L+ G Sbjct: 157 LARAEAADADLRLVRLSIAADTARAYFEIQGYQRRLDVARAQVRSWRDTLELTRSSLQLG 216 Query: 196 TASNLDLIRVRNQLDGTRSDQVPLQADLESYLNQLATLVGQEPGTLDEMLVANANAENAE 255 + D+ + L + + PL LES +L L G+ PG+ +L A A A+ Sbjct: 217 SGLPEDVENAQANLLRSEAAIPPLTTALESARYRLDVLRGEAPGSGAPILDGGAAAPLAK 276 Query: 256 NAVPLPPAQVAAGDPQALLRRRPDIRAAERTLAADTAKIGQAEAARYPSLKLFGVIGLGG 315 N +PL GD L+ +RPD+ +AER LAA T +G A A YP L L G IG Sbjct: 277 N-LPL-------GDVDRLILQRPDVVSAERQLAASTEDVGAATAELYPRLDLGGFIGFFA 328 Query: 316 THPSDLTKLDDFTAVAAPMLSWNFLDFGRAKARVTQAERVRDEAEIKYRQSVLEALRDAE 375 DL + AP +SW G +AR+ E D A +Y++S+L A D Sbjct: 329 LRSGDLGSASRAFEL-APSVSWPAFRLGNVRARLRAVEAQSDAALARYQRSLLLAQEDVG 387 Query: 376 DSLSRFRYGRVTVATVARTKASADRALDLAQQRYRAGTGTLIDVLDTTRQQLSAQQNLSQ 435 ++L++ + + + ++ AL++A +RYRAG G+ + VL+ R ++ L+Q Sbjct: 388 NALNQLAEHQRRLVALFQSATHGANALEIANERYRAGAGSYLAVLENQRALYQIREELAQ 447 Query: 436 AEAALTRSFVGIQKALGLGWGS 457 AE A + + + KA LGWGS Sbjct: 448 AETASFVNVIALYKA--LGWGS 467