BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0289.p         (360 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4601_2 [T] COG2199 FOG Pae Pseudomonas aeruginosa                   107   4e-23
sll0267_5 [T] COG2199 FOG Syn Synechocystis                           106   1e-22
RSc0510_2 [T] COG2199 FOG Rso Ralstonia solanacearum                  100   9e-21
CC0655_2 [T] COG2199 FOG Ccr Caulobacter vibrioides                    97   7e-20
CC0740_1 [T] COG2199 FOG Ccr Caulobacter vibrioides                    96   1e-19

>PA4601_2 [T] COG2199 FOG Pae Pseudomonas aeruginosa
          Length = 207

 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 69/96 (71%)

Query: 226 DITERKIAEERIKELAFFDALTRLPNRTLLLDRLKQAIAASTRNKTSSALLFIDLDHFKT 285
           DI+ERK +E RI  LA++DALT LPNRTL  DRL  A+  + RN     L+F+DLD FK 
Sbjct: 2   DISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQWVVLMFLDLDRFKP 61

Query: 286 LNDTLGHDKGDLLLKQVAQRLALSVRANDTVARVGG 321
           +ND+LGH  GD +L++VA RL+  V  +DTVAR+GG
Sbjct: 62  INDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGG 97


>sll0267_5 [T] COG2199 FOG Syn Synechocystis
          Length = 187

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 70/92 (76%)

Query: 230 RKIAEERIKELAFFDALTRLPNRTLLLDRLKQAIAASTRNKTSSALLFIDLDHFKTLNDT 289
           RK AE +I+ LA++D LT LPNR LLLDR + A+A + R+K   A++ IDLD FKTLND 
Sbjct: 1   RKQAEAQIENLAYYDPLTALPNRRLLLDRAENALALAQRSKHFGAIVLIDLDGFKTLNDA 60

Query: 290 LGHDKGDLLLKQVAQRLALSVRANDTVARVGG 321
            GHD GD LL+ VA+RLA S+R +DTVAR+GG
Sbjct: 61  RGHDSGDRLLQMVAKRLADSLRDSDTVARLGG 92


>RSc0510_2 [T] COG2199 FOG Rso Ralstonia solanacearum
          Length = 183

 Score = 99.8 bits (247), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 66/106 (62%)

Query: 233 AEERIKELAFFDALTRLPNRTLLLDRLKQAIAASTRNKTSSALLFIDLDHFKTLNDTLGH 292
           A   +  LA  D+LT+L NR LL DRL QAI A+  N+ S AL+F+DLD FK +ND  GH
Sbjct: 19  ANRELAYLALHDSLTKLSNRLLLEDRLDQAIQAAGSNRGSFALMFLDLDGFKAINDVYGH 78

Query: 293 DKGDLLLKQVAQRLALSVRANDTVARVGGXRIRRGAGKPAPQSSGS 338
             GDLLL  VA+R+   VR  DTVARVGG      AG   P  +G+
Sbjct: 79  HAGDLLLADVARRIVACVRQQDTVARVGGDEFVVLAGVGEPADAGT 124


>CC0655_2 [T] COG2199 FOG Ccr Caulobacter vibrioides
          Length = 205

 Score = 96.7 bits (239), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 65/96 (67%)

Query: 226 DITERKIAEERIKELAFFDALTRLPNRTLLLDRLKQAIAASTRNKTSSALLFIDLDHFKT 285
           DIT+R+   E I+ LAF D LT LPNRTL   R ++A++AS        L+ ID+DHFK 
Sbjct: 4   DITDRRRQTEAIETLAFKDPLTGLPNRTLFQHRFQEAVSASETLGEMFGLIMIDVDHFKD 63

Query: 286 LNDTLGHDKGDLLLKQVAQRLALSVRANDTVARVGG 321
           +NDTLGHD GD LLK++A  L  + R  DTVAR+GG
Sbjct: 64  INDTLGHDAGDALLKRLAGMLQHAFRTGDTVARLGG 99


>CC0740_1 [T] COG2199 FOG Ccr Caulobacter vibrioides
          Length = 566

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/127 (46%), Positives = 75/127 (59%), Gaps = 3/127 (2%)

Query: 198 GQVYPEWLTISA--VKGDDGVVTHYVGTHHDITERKIAEERIKELAFFDALTRLPNRTLL 255
           G+    W  +SA  V   DG+   + G   DIT+ +  +ERI  LA +D LT+LPNR  L
Sbjct: 351 GRPATHWWALSAKPVHDLDGLFVGFRGVGADITQAREDQERISHLAHYDVLTQLPNRLSL 410

Query: 256 LDRLKQAIAASTRNKTS-SALLFIDLDHFKTLNDTLGHDKGDLLLKQVAQRLALSVRAND 314
           L  L +A     R+KTS  A+L +DLDHFK +ND+LGH  GD LL QVA RL   V    
Sbjct: 411 LQNLGKAWMDHGRDKTSGCAVLCLDLDHFKGVNDSLGHPVGDALLMQVASRLRSCVGETG 470

Query: 315 TVARVGG 321
            VAR+GG
Sbjct: 471 MVARLGG 477