BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0288.p         (121 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1545 [T] COG5001 Predicted signal transduction protein contai...    58   6e-09

>RSc1545 [T] COG5001 Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain Rso Ralstonia
           solanacearum
          Length = 776

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 3/110 (2%)

Query: 2   LDSPYQLG-EVEYRTTASVGATVFRGRQASIDELLKQADLAMYKSKETGRNAISFFDPAM 60
           L +PY LG +   R  AS+G  +        + LL +AD+A+Y +K  G+     F   M
Sbjct: 446 LGAPYALGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAAGKGLARLFCADM 505

Query: 61  QTVVLERAALEAGLRKAID-DGQLVLHYQAQV-VEGGRVTGAEVLVRWQH 108
           +T +  RA LEA LR A++   +L + YQ  V V  G+VT  E LVRW H
Sbjct: 506 ETRIQARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRWHH 555