BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0287.p         (191 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sll0267_6 [T] COG2200 FOG Syn Synechocystis                           181   1e-45
SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti                 179   3e-45
PA0575_4 [T] COG2200 FOG Pae Pseudomonas aeruginosa                   165   7e-41
all4225_2 [T] COG2200 FOG Nos Nostoc sp. PCC 7120                     161   7e-40
RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum                  161   8e-40

>sll0267_6 [T] COG2200 FOG Syn Synechocystis
          Length = 253

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/179 (49%), Positives = 125/179 (69%), Gaps = 2/179 (1%)

Query: 1   METACTQLARWALRAGTAHLSIAVNVSVQQFREADFVETVCGILERTGANPKRLKLELTE 60
           +E  C  LAR  L+     L IA+NVS +QFR+A+F + +  +L  TG +P RL LE+TE
Sbjct: 72  LEQVCQYLAR--LQQLGLTLRIAINVSPRQFRQANFAKEIKNLLACTGVDPYRLTLEVTE 129

Query: 61  SLLVDNVEDIIQKMNALKARGVEFSLDDFGIGYSSLSYLKRLPLNQLKIDQSFVRDVLID 120
            L+V++    I  M  L+  G+ FS+DDFG GYSSLSYLKRLPLN+LKID++FV+D   D
Sbjct: 130 GLIVEDTHQAIATMFELQTLGIHFSVDDFGTGYSSLSYLKRLPLNELKIDRAFVQDAPQD 189

Query: 121 PNDASIAKTIVALAQSLGLGVIAEGVETDAQRNFLADAGCLAYQGYFFCRPLPLDGFEQ 179
            N+A++ + I+++A++  L ++AEGVET+ Q  FLA  GC  YQGYF+ RP+P+D F Q
Sbjct: 190 LNNAALVEAIISVARTFNLAIVAEGVETEEQVQFLAQLGCNFYQGYFYGRPMPIDEFHQ 248


>SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti
          Length = 257

 Score =  179 bits (454), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/178 (52%), Positives = 121/178 (67%), Gaps = 1/178 (0%)

Query: 1   METACTQLARWALRAGTAHLSIAVNVSVQQFREADFVETVCGILERTGANPKRLKLELTE 60
           + TAC QL  W   AG   L ++VNVS +QFRE ++   V  +LE T    + L+LELTE
Sbjct: 73  LRTACRQLKAWQ-DAGLPPLIVSVNVSARQFRERNWAARVAAVLEETCLEARYLELELTE 131

Query: 61  SLLVDNVEDIIQKMNALKARGVEFSLDDFGIGYSSLSYLKRLPLNQLKIDQSFVRDVLID 120
           SL++ +V   I  M+AL+A GV  ++DDFG GYSSLS LKR P+ +LKID+SFV D+  D
Sbjct: 132 SLIMQDVPGAIATMHALEAIGVHLAIDDFGTGYSSLSALKRFPVRRLKIDRSFVTDIPHD 191

Query: 121 PNDASIAKTIVALAQSLGLGVIAEGVETDAQRNFLADAGCLAYQGYFFCRPLPLDGFE 178
            +D +I   I++LAQ LGL VIAEGVET+AQ  FL  +GC   QGYFF +PLP + FE
Sbjct: 192 ADDMAITSAIISLAQKLGLRVIAEGVETEAQVEFLQKSGCGEIQGYFFSQPLPGEDFE 249


>PA0575_4 [T] COG2200 FOG Pae Pseudomonas aeruginosa
          Length = 267

 Score =  165 bits (417), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 85/189 (44%), Positives = 124/189 (65%), Gaps = 4/189 (2%)

Query: 1   METACTQLARW-ALRAGTAHLSIAVNVSVQQFREADFVETVCGILERTGANPKRLKLELT 59
           +E AC Q+  W  L A    LS  VN++  Q  +   +E +  +LE++G  P RL+LE+T
Sbjct: 73  LEHACQQMGEWQKLHAPFGPLS--VNLAGAQLGQPQLIERLEQLLEQSGLEPSRLQLEIT 130

Query: 60  ESLLVDNVEDIIQKMNALKARGVEFSLDDFGIGYSSLSYLKRLPLNQLKIDQSFVRDVLI 119
           ES +++  E+ +  ++ LK  GV+ ++DDFG GYSSLSYLKRLPL+ LKID+SF+R +  
Sbjct: 131 ESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPD 190

Query: 120 DPNDASIAKTIVALAQSLGLGVIAEGVETDAQRNFLADAGCLAYQGYFFCRPLPLDGF-E 178
           DP+DA+I + I+AL +S+ L VIAEGVET+ Q++FL   GC   QG+    PLP + F  
Sbjct: 191 DPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGCEQIQGFVLSPPLPAELFAS 250

Query: 179 QFVHAFDPI 187
           +F+    PI
Sbjct: 251 KFLKPRQPI 259


>all4225_2 [T] COG2200 FOG Nos Nostoc sp. PCC 7120
          Length = 260

 Score =  161 bits (408), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 79/173 (45%), Positives = 116/173 (67%), Gaps = 1/173 (0%)

Query: 1   METACTQLARWALRAGTAHLSIAVNVSVQQFREADFVETVCGILERTGANPKRLKLELTE 60
           + TAC Q   W L AG   + ++VN+S +QF E++ VE V  I++ +G +P  L+LE+TE
Sbjct: 73  LRTACLQNRTWQL-AGLPPIRMSVNLSARQFEESNLVELVSEIIQESGLHPSYLELEVTE 131

Query: 61  SLLVDNVEDIIQKMNALKARGVEFSLDDFGIGYSSLSYLKRLPLNQLKIDQSFVRDVLID 120
           S L+ +++  +  +  L+  GV  +LDDFG GYSSL+YLKR P+N LKID+SFV+DV  +
Sbjct: 132 SSLMTDIQRSVTILKQLRELGVWLALDDFGTGYSSLNYLKRFPVNMLKIDRSFVQDVCSN 191

Query: 121 PNDASIAKTIVALAQSLGLGVIAEGVETDAQRNFLADAGCLAYQGYFFCRPLP 173
           P+ A++   I+ALA+SL L + AEG+ET  Q ++L   GC   QGY+F  P P
Sbjct: 192 PDSAAVTNAIIALAKSLQLKITAEGIETQQQLSYLQKRGCQEGQGYYFGIPAP 244


>RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum
          Length = 282

 Score =  161 bits (407), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 84/172 (48%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 1   METACTQLARWALRAGTAHLSIAVNVSVQQFREADFVETVCGILERTGANPKRLKLELTE 60
           ++ AC Q+A+W  R G A  SIAVN+S  QF  A  V+TV   L R    P+ L LE+TE
Sbjct: 86  LDEACRQMAQWR-REGHAQWSIAVNLSAVQFAHAALVDTVRDTLARHALEPQGLTLEITE 144

Query: 61  SLLVDNVEDIIQKMNALKARGVEFSLDDFGIGYSSLSYLKRLPLNQLKIDQSFVRDVLID 120
           S  + + +  +  +  L A GV  S+DDFG GYSSL YLKRLP ++LKID+ FVRD+  D
Sbjct: 145 STAMRDADASLHILQQLHAMGVRISIDDFGTGYSSLLYLKRLPASELKIDRGFVRDLAHD 204

Query: 121 PNDASIAKTIVALAQSLGLGVIAEGVETDAQRNFLADAGCLAYQGYFFCRPL 172
             DA+I   +VAL Q+L L ++AEGVET+AQ+ FL   GC A QG    RP+
Sbjct: 205 SEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTRLGCHALQGNLLGRPM 256