BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0264.p         (143 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0420 [L] COG0178 Excinuclease ATPase subunit Rso Ralstonia so...   145   2e-35
YPO0324 [L] COG0178 Excinuclease ATPase subunit Ype Yersinia pestis   122   4e-28
PM1951 [L] COG0178 Excinuclease ATPase subunit Pmu Pasteurella m...   119   2e-27
HI0249 [L] COG0178 Excinuclease ATPase subunit Hin Haemophilus i...   119   3e-27
NMB0962 [L] COG0178 Excinuclease ATPase subunit Nme Neisseria me...   116   1e-26

>RSc0420 [L] COG0178 Excinuclease ATPase subunit Rso Ralstonia solanacearum
          Length = 954

 Score =  145 bits (367), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 78/98 (79%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           ML +LAAFY+FD D PFE+LP + Q V+L GSG+Q IPFTY+NERGRT +REH FEG++ 
Sbjct: 328 MLQSLAAFYDFDTDTPFEELPSEVQDVVLQGSGKQQIPFTYINERGRTTVREHAFEGIIP 387

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGARXINE 98
           NL+RRY+ETDS+AV+EELAK+ N + CP C G R   E
Sbjct: 388 NLERRYKETDSIAVREELAKYQNNQACPECEGTRLRRE 425


>YPO0324 [L] COG0178 Excinuclease ATPase subunit Ype Yersinia pestis
          Length = 947

 Score =  122 bits (305), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/98 (55%), Positives = 71/98 (72%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           ML +LA  Y+FDI+ PF  L    QQ +LYGSG+ TI F Y+N+RG T +R H FEGV+ 
Sbjct: 320 MLRSLAEHYKFDIEAPFNSLDSAVQQAVLYGSGKDTIEFKYINDRGDTTVRRHPFEGVLH 379

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGARXINE 98
           N++RRY+ET+S AV+EELAKFI+ + C SC+G R   E
Sbjct: 380 NMERRYKETESSAVREELAKFISNRSCASCSGTRLRRE 417


>PM1951 [L] COG0178 Excinuclease ATPase subunit Pmu Pasteurella multocida
          Length = 943

 Score =  119 bits (297), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/98 (54%), Positives = 73/98 (74%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           ML++LA  YEFDI+ PFE LP+K QQ+IL GSG++ I F Y+N+RG  V+R H FEG++ 
Sbjct: 320 MLTSLAKHYEFDIESPFEALPKKIQQIILNGSGKEEIEFQYMNDRGDVVVRHHAFEGILN 379

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGARXINE 98
           N+ RRY+ET+S++V+EELAK I+   C  C G+R   E
Sbjct: 380 NMARRYKETESLSVREELAKNISTCPCHDCGGSRLRQE 417


>HI0249 [L] COG0178 Excinuclease ATPase subunit Hin Haemophilus influenzae
          Length = 943

 Score =  119 bits (297), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/94 (52%), Positives = 73/94 (77%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           ML++LA  Y FD++ P+E LP+K Q +I++GSG++ I F Y+N+RG  VIR+H FEG++ 
Sbjct: 320 MLTSLAKHYHFDVEAPYESLPKKIQHIIMHGSGKEEIEFQYMNDRGDVVIRKHPFEGILN 379

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGAR 94
           N+ RRY+ET+SM+V+EELAK I+ + C  C G+R
Sbjct: 380 NMARRYKETESMSVREELAKNISNRPCIDCGGSR 413


>NMB0962 [L] COG0178 Excinuclease ATPase subunit Nme Neisseria meningitidis
           MC58
          Length = 949

 Score =  116 bits (291), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/98 (52%), Positives = 71/98 (72%)

Query: 1   MLSNLAAFYEFDIDIPFEQLPEKSQQVILYGSGRQTIPFTYVNERGRTVIREHTFEGVVT 60
           M+ +LA  Y FD+   +E LPEK ++V+L+GSG++ I FTY++ERG T  R H FEG++ 
Sbjct: 329 MIQSLARHYGFDVQAAWETLPEKVKKVVLHGSGKEVIDFTYLSERGTTFNRSHAFEGIIP 388

Query: 61  NLQRRYRETDSMAVKEELAKFINEKECPSCAGARXINE 98
           NL+RRYRETDS  V+E+L ++ N + CPSC GAR   E
Sbjct: 389 NLERRYRETDSETVREKLREYQNHRACPSCGGARLRKE 426