BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0263.p (334 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0420 [L] COG0178 Excinuclease ATPase subunit Rso Ralstonia so... 255 8e-68 YPO0324 [L] COG0178 Excinuclease ATPase subunit Ype Yersinia pestis 237 3e-62 ZuvrA [L] COG0178 Excinuclease ATPase subunit EcZ Escherichia co... 236 6e-62 uvrA [L] COG0178 Excinuclease ATPase subunit Eco Escherichia col... 236 6e-62 ECs5040 [L] COG0178 Excinuclease ATPase subunit Ecs Escherichia ... 236 6e-62 >RSc0420 [L] COG0178 Excinuclease ATPase subunit Rso Ralstonia solanacearum Length = 954 Score = 255 bits (652), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 126/161 (78%), Positives = 140/161 (86%) Query: 1 LSFFENLKLTGAKKEIADRIIKEIISRLKFLNNVGLDYLSLERSADTLSGGEAQRIRLAS 60 L++F L L GAK+EIAD+I++EI SRL FLNNVGLDYLSLERSADTLSGGEAQRIRLAS Sbjct: 452 LTYFLTLNLHGAKREIADKIVQEITSRLNFLNNVGLDYLSLERSADTLSGGEAQRIRLAS 511 Query: 61 QIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDIGNSVLVVEHDEDAIRTADYVVD 120 QIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRD+GNSVLVVEHDED IR +D+VVD Sbjct: 512 QIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDLGNSVLVVEHDEDMIRASDHVVD 571 Query: 121 MGLGAGVHGGDIIAQGTLEDILKSKKSLTAKYLNGSLEISV 161 +G GAGVHGG IIA+GT I +S SLT +YL+G I V Sbjct: 572 IGPGAGVHGGQIIAEGTPRQIERSPGSLTGEYLSGKRRIEV 612 Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 62/128 (48%), Positives = 92/128 (71%), Gaps = 1/128 (0%) Query: 27 RLKFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTG-VMYVLDEPSIGLHQRDN 85 +L+ L +VGL Y+ L +SA TLSGGEAQR++L+ ++ TG +Y+LDEP+ GLH D Sbjct: 820 KLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDI 879 Query: 86 DRLIGTLKHLRDIGNSVLVVEHDEDAIRTADYVVDMGLGAGVHGGDIIAQGTLEDILKSK 145 + L+ + LRD GN+V+++EH+ D I+TAD+++D+G G GG IIA+GT E++ KS+ Sbjct: 880 ELLLKVIHKLRDQGNTVVIIEHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEEVAKSR 939 Query: 146 KSLTAKYL 153 S T KYL Sbjct: 940 ASFTGKYL 947 >YPO0324 [L] COG0178 Excinuclease ATPase subunit Ype Yersinia pestis Length = 947 Score = 237 bits (605), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 110/161 (68%), Positives = 143/161 (88%) Query: 1 LSFFENLKLTGAKKEIADRIIKEIISRLKFLNNVGLDYLSLERSADTLSGGEAQRIRLAS 60 LSFF+N+KL+G + +IA++I+KEI RLKFL NVGL+YLSL RSA+TLSGGEAQRIRLAS Sbjct: 440 LSFFQNMKLSGQRAQIAEKILKEIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLAS 499 Query: 61 QIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDIGNSVLVVEHDEDAIRTADYVVD 120 QIG+GL GVMYVLDEPSIGLHQRDN+RL+ TL HLR++GN+V+VVEHDEDAIR AD+V+D Sbjct: 500 QIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNTVIVVEHDEDAIRAADHVID 559 Query: 121 MGLGAGVHGGDIIAQGTLEDILKSKKSLTAKYLNGSLEISV 161 +G GAGVHGG+++A+GT++DI+ + SLT ++L+G I++ Sbjct: 560 IGPGAGVHGGEVVAEGTVDDIMAAPASLTGQFLSGKRSIAI 600 Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 60/139 (43%), Positives = 93/139 (66%), Gaps = 1/139 (0%) Query: 21 IKEIISRLKFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTG-VMYVLDEPSIG 79 + + +L+ L +VGL Y+ L +SA TLSGGEAQR++L+ ++ TG +Y+LDEP+ G Sbjct: 803 VPALARKLQTLIDVGLSYICLGQSATTLSGGEAQRVKLSRELSKRGTGQTLYILDEPTTG 862 Query: 80 LHQRDNDRLIGTLKHLRDIGNSVLVVEHDEDAIRTADYVVDMGLGAGVHGGDIIAQGTLE 139 LH D +L+ L LRD GN+++V+EH+ D I+TAD++VD+G G GG+I+ GT E Sbjct: 863 LHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPE 922 Query: 140 DILKSKKSLTAKYLNGSLE 158 + + S TA++L L+ Sbjct: 923 TVAECAASHTARFLKPMLQ 941 >ZuvrA [L] COG0178 Excinuclease ATPase subunit EcZ Escherichia coli O157:H7 EDL933 Length = 940 Score = 236 bits (602), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 111/161 (68%), Positives = 139/161 (86%) Query: 1 LSFFENLKLTGAKKEIADRIIKEIISRLKFLNNVGLDYLSLERSADTLSGGEAQRIRLAS 60 + FF NLKL G + +IA++I+KEI RLKFL NVGL+YL+L RSA+TLSGGEAQRIRLAS Sbjct: 440 MEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLAS 499 Query: 61 QIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDIGNSVLVVEHDEDAIRTADYVVD 120 QIG+GL GVMYVLDEPSIGLHQRDN+RL+GTL HLRD+GN+V+VVEHDEDAIR AD+V+D Sbjct: 500 QIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVID 559 Query: 121 MGLGAGVHGGDIIAQGTLEDILKSKKSLTAKYLNGSLEISV 161 +G GAGVHGG+++A+G LE I+ +SLT +Y++G +I V Sbjct: 560 IGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV 600 Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 93/138 (67%), Gaps = 1/138 (0%) Query: 21 IKEIISRLKFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTG-VMYVLDEPSIG 79 + + +L+ L +VGL Y+ L +SA TLSGGEAQR++LA ++ TG +Y+LDEP+ G Sbjct: 803 VPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTG 862 Query: 80 LHQRDNDRLIGTLKHLRDIGNSVLVVEHDEDAIRTADYVVDMGLGAGVHGGDIIAQGTLE 139 LH D +L+ L LRD GN+++V+EH+ D I+TAD++VD+G G GG+I+ GT E Sbjct: 863 LHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPE 922 Query: 140 DILKSKKSLTAKYLNGSL 157 + + + S TA++L L Sbjct: 923 TVAECEASHTARFLKPML 940 >uvrA [L] COG0178 Excinuclease ATPase subunit Eco Escherichia coli K12 Length = 940 Score = 236 bits (602), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 111/161 (68%), Positives = 139/161 (86%) Query: 1 LSFFENLKLTGAKKEIADRIIKEIISRLKFLNNVGLDYLSLERSADTLSGGEAQRIRLAS 60 + FF NLKL G + +IA++I+KEI RLKFL NVGL+YL+L RSA+TLSGGEAQRIRLAS Sbjct: 440 MEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLAS 499 Query: 61 QIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDIGNSVLVVEHDEDAIRTADYVVD 120 QIG+GL GVMYVLDEPSIGLHQRDN+RL+GTL HLRD+GN+V+VVEHDEDAIR AD+V+D Sbjct: 500 QIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVID 559 Query: 121 MGLGAGVHGGDIIAQGTLEDILKSKKSLTAKYLNGSLEISV 161 +G GAGVHGG+++A+G LE I+ +SLT +Y++G +I V Sbjct: 560 IGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV 600 Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 93/138 (67%), Gaps = 1/138 (0%) Query: 21 IKEIISRLKFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTG-VMYVLDEPSIG 79 + + +L+ L +VGL Y+ L +SA TLSGGEAQR++LA ++ TG +Y+LDEP+ G Sbjct: 803 VPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTG 862 Query: 80 LHQRDNDRLIGTLKHLRDIGNSVLVVEHDEDAIRTADYVVDMGLGAGVHGGDIIAQGTLE 139 LH D +L+ L LRD GN+++V+EH+ D I+TAD++VD+G G GG+I+ GT E Sbjct: 863 LHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPE 922 Query: 140 DILKSKKSLTAKYLNGSL 157 + + + S TA++L L Sbjct: 923 TVAECEASHTARFLKPML 940 >ECs5040 [L] COG0178 Excinuclease ATPase subunit Ecs Escherichia coli O157:H7 Length = 940 Score = 236 bits (601), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 111/161 (68%), Positives = 139/161 (86%) Query: 1 LSFFENLKLTGAKKEIADRIIKEIISRLKFLNNVGLDYLSLERSADTLSGGEAQRIRLAS 60 + FF NLKL G + +IA++I+KEI RLKFL NVGL+YL+L RSA+TLSGGEAQRIRLAS Sbjct: 440 MEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLAS 499 Query: 61 QIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDIGNSVLVVEHDEDAIRTADYVVD 120 QIG+GL GVMYVLDEPSIGLHQRDN+RL+GTL HLRD+GN+V+VVEHDEDAIR AD+V+D Sbjct: 500 QIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVID 559 Query: 121 MGLGAGVHGGDIIAQGTLEDILKSKKSLTAKYLNGSLEISV 161 +G GAGVHGG+++A+G LE I+ +SLT +Y++G +I V Sbjct: 560 IGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV 600 Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 93/138 (67%), Gaps = 1/138 (0%) Query: 21 IKEIISRLKFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTG-VMYVLDEPSIG 79 + + +L+ L +VGL Y+ L +SA TLSGGEAQR++LA ++ TG +Y+LDEP+ G Sbjct: 803 VPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTG 862 Query: 80 LHQRDNDRLIGTLKHLRDIGNSVLVVEHDEDAIRTADYVVDMGLGAGVHGGDIIAQGTLE 139 LH D +L+ L LRD GN+++V+EH+ D I+TAD++VD+G G GG+I+ GT E Sbjct: 863 LHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPE 922 Query: 140 DILKSKKSLTAKYLNGSL 157 + + + S TA++L L Sbjct: 923 TVAECEASHTARFLKPML 940