BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0232.p (443 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF2013 [H] COG1541 Coenzyme F390 synthetase Afu Archaeoglobus fu... 267 3e-71 AF1671 [H] COG1541 Coenzyme F390 synthetase Afu Archaeoglobus fu... 265 2e-70 RSc2875 Non COG 252 1e-66 BH0195 [H] COG1541 Coenzyme F390 synthetase Bha Bacillus halodurans 246 8e-65 MA2244 [H] COG1541 Coenzyme F390 synthetase Mac Methanosarcina a... 246 1e-64 >AF2013 [H] COG1541 Coenzyme F390 synthetase Afu Archaeoglobus fulgidus Length = 440 Score = 267 bits (683), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 158/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%) Query: 7 IAAAPAHLDPAESWDRATLEAFQLEQLRVQLARLARDSAYYAPLFRQLDWNVGELRSLAD 66 +A + + E + LE QL++LR + + A+Y ++ + +++ D Sbjct: 5 MAYSELYWQKEEVMPKKELEELQLKRLRWVVRHAYENVAHYRRKLKEAGVHPDDIKKRED 64 Query: 67 LSKLPFTTKPDYINTLGPQAPFGKFMTVPQSEVRRMHFSSGTTSAPSPQFWSERDLDRWA 126 ++K+PFTTK D+ PFG F VP+ E+ R+H SSGTT P ++ DL+ W Sbjct: 65 IAKIPFTTKKDF----AENYPFGLF-AVPKEEIVRLHTSSGTTGKPKVVGYTANDLENWI 119 Query: 127 GLYARHARAQGIGPGDIVQCMFSYTWFVGGLGATAGYQRAGAMVIPAGSQDTGRQIDTLF 186 L AR G+ DI Q M +Y +F GGLG G +R GAMVIPAG +T RQ+ + Sbjct: 120 NLVARCLYMVGVRKHDIFQNMANYAFFTGGLGIHDGAERIGAMVIPAGVGNTERQVRCMA 179 Query: 187 TYGSTVLCGTPSFITHLAEEVRKRGRDPAASTVRSIMMGGEPGASIPATRRRIEALWGAR 246 +G+T + TPS+ H+ E + G D S +R G EP + TR+R+E + + Sbjct: 180 DFGTTAIHSTPSYALHVKEVAEELGVDDKLS-LRIGCFGAEPWSE--NTRKRLEDAFNIK 236 Query: 247 AYDAYGCLEFQ--PIAGDCTAQAGPHLAEDFAYAEIVDAETGAAVADGTPGVLVLTHLDK 304 A+D+YG E +A +C Q G H+ D + EI+D +TG +++G G LVLT L K Sbjct: 237 AFDSYGLSEMNGPGVAFECEEQHGLHIWADHYFIEIIDPQTGEPLSEGEKGELVLTPLTK 296 Query: 305 QAGPLVRWWTGDIVLRDATPCSCGRTH---ARLVG-GXSMLVVRGVNIFPSAVEELVRAT 360 +A P++R+ TGDI CSCGRTH R++G M++VRG+N+FPS +E ++ Sbjct: 297 EALPVLRYRTGDITYIMDDECSCGRTHPKIHRILGRSDDMIIVRGINVFPSQIEHVLMQI 356 Query: 361 PGLGDEYQLVINASVHDAAGFMKSIHVRVEQTDA--SADAAQLTALAAQLTQEIKQRLHV 418 P +GD +Q+VI + G + I VRVE D + + L L ++ +E+++ L + Sbjct: 357 PEVGDHFQVVITRN-----GTLDEITVRVEVRDELFTGELFDLQRLQQKVQRELQKELGL 411 Query: 419 GAHVEVLPQGTLARSTHKAKRVV 441 +VE++ +GT+ RS KAKRV+ Sbjct: 412 RTNVELVEKGTIERSKGKAKRVL 434 >AF1671 [H] COG1541 Coenzyme F390 synthetase Afu Archaeoglobus fulgidus Length = 433 Score = 265 bits (676), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 163/438 (37%), Positives = 241/438 (55%), Gaps = 20/438 (4%) Query: 13 HLDPA-ESWDRATLEAFQLEQLRVQLARLARDSAYYAPLFRQLDWNVGELRSLADLSKLP 71 + +PA E + LE Q +L+ ++ + + S +Y FR+ +++SL DL KLP Sbjct: 2 YWNPAIERLNAKELEEIQERKLKALVSTVYQYSPFYRQRFREAGVTPDDIKSLNDLPKLP 61 Query: 72 FTTKPDYINTLGPQAPFGKFMTVPQSEVRRMHFSSGTTSAPSPQFWSERDLDRWAGLYAR 131 FT K D +T PFG F VP S+V R H SSGTT P+ ++ D+ W R Sbjct: 62 FTKKQDLRDTY----PFGMF-CVPLSQVVRFHASSGTTGKPTVVGYTANDIRNWVESLCR 116 Query: 132 HARAQGIGPGDIVQCMFSYTWFVGGLGATAGYQRAGAMVIPAGSQDTGRQIDTLFTYGST 191 + G+ DI+Q + Y F GGLG +R GA V+P + +T RQI+ + GST Sbjct: 117 ALVSCGVSSDDIMQIAYGYGLFTGGLGFHYAAERLGATVLPISAGNTARQIELMKDLGST 176 Query: 192 VLCGTPSFITHLAEEVRKRGRDPAAST-VRSIMMGGEPGASIPATRRRIEALWGARAYDA 250 V+ TPS++ +LAE + G D A T +R+ + G EP + TR+RIE G AYD Sbjct: 177 VMACTPSYMIYLAEYASQMGVDIAEDTNLRAGIFGAEPWSE--ETRKRIEDKTGITAYDV 234 Query: 251 YGCLEFQ-PIAGDCTAQAGPHLAEDFAYAEIVDAETGAAVADGTPGVLVLTHLDKQAGPL 309 YG E P+ +CT + G H+ D EI+D +TG V +G G LV+T L K+A PL Sbjct: 235 YGTSELSGPLFTECTERQGLHIWADMFLIEIIDPKTGEQVGEGEKGELVVTTLTKEALPL 294 Query: 310 VRWWTGDIVLRDATPCSCGRTHARLV----GGXSMLVVRGVNIFPSAVEELVRATPGLGD 365 +RW TGDI + C+CGRTH R++ ML++RGVN+FPS +E ++ P +G+ Sbjct: 295 IRWRTGDITYMETDKCACGRTHPRIMRILGRADDMLIIRGVNVFPSQIEHVLMQIPEVGE 354 Query: 366 EYQLVINASVHDAAGFMKSIHVRVEQTD-ASADAA-QLTALAAQLTQEIKQRLHVGAHVE 423 Y ++++ D + + V+VE +D A D + L ++ ++K L+V A VE Sbjct: 355 HYMIIVDRR-EDG---LDELTVQVELSDKAEIDTTGDILKLEKKIADKLKSVLNVWAKVE 410 Query: 424 VLPQGTLARSTHKAKRVV 441 V+ GTL R KAKRV+ Sbjct: 411 VVNPGTLQRFEGKAKRVI 428 >RSc2875 Non COG Length = 436 Score = 252 bits (644), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 171/437 (39%), Positives = 232/437 (53%), Gaps = 26/437 (5%) Query: 14 LDPAESWDRATLEAFQLEQLRVQLARLARDSAYYAPLFRQLDWNVGELRSLADLSKLPFT 73 LDP E+ R ++A QLE+LR LA + Y F + + +LR+L DL++ PFT Sbjct: 10 LDPIETASRDAVQALQLERLRHSLAHAYANVPAYRAKFDAVGVHPSDLRALGDLARFPFT 69 Query: 74 TKPDYINTLGPQAPFGKFMTVPQSEVRRMHFSSGTTSAPSPQFWSERDLDRWAGLYARHA 133 TK D L PFG F VPQ + R+H SSGTT P+ ++ D+D WAGL AR Sbjct: 70 TKAD----LRENYPFGMF-AVPQERIARIHASSGTTGKPTVVGYTLADIDTWAGLVARSI 124 Query: 134 RAQGIGPGDIVQCMFSYTWFVGGLGATAGYQRAGAMVIPAGSQDTGRQIDTLFTYGSTVL 193 RA G GD V + Y F GGLGA G +RAG VIP G T RQ+ + + ++ Sbjct: 125 RAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGGQTERQVQLIRDFQPQII 184 Query: 194 CGTPSFITHLAEEVRKRGRDPAASTVRSIMMGGEPGASIPATRRRIEALWGARAYDAYGC 253 TPS++ +A+E ++G DPA S++R + G EP P R IEA G A D YG Sbjct: 185 MVTPSYMLAIADEFVRQGLDPAQSSLRIGIFGAEPWT--PEMRTVIEARMGLSAVDIYGL 242 Query: 254 LEFQ--PIAGDCT-AQAGPHLAEDFAYAEIVDAETGAAVADGTPGVLVLTHLDKQAGPLV 310 E +A +C + GP + ED Y EI+D ETG + DG G LV T L K+A P+V Sbjct: 243 SEVMGPGVASECAETKDGPTIWEDHFYPEIIDPETGTVLPDGAFGELVFTSLTKEAMPVV 302 Query: 311 RWWTGDIV-LRDATPCSCGRTHARLVG-GXSMLVVRGVNIFPSAVEELVRATPGLGDEYQ 368 R+ T D+ L T R ++ G M++VRGVN+FPS +EEL+ L YQ Sbjct: 303 RYRTRDLTRLLPGTARPAFRRMEKITGRCDDMMIVRGVNVFPSQIEELILKHAALSPHYQ 362 Query: 369 LVINASVHDAAGFMKSIHVRVEQTDAS----ADAAQLTALAAQLTQEIKQRLHVGAHVEV 424 V+ G + ++ VRVE + ADAA QL +IK + V A +E+ Sbjct: 363 CVLAKE-----GPLDTLTVRVEAALGTPAEVADAA-----GGQLAHDIKAMIGVTAAIEL 412 Query: 425 LPQGTLARSTHKAKRVV 441 L G + RS KA+RVV Sbjct: 413 LAVGGVERSVGKARRVV 429 >BH0195 [H] COG1541 Coenzyme F390 synthetase Bha Bacillus halodurans Length = 445 Score = 246 bits (628), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 149/445 (33%), Positives = 234/445 (52%), Gaps = 27/445 (6%) Query: 12 AHLDPAESWDRATLEAFQLEQLRVQLARLARDSAYYAPLFRQLDWNVGELRSLADLSKLP 71 A D E+ E Q L+ + + + +Y F+++D +++SL D+ KLP Sbjct: 2 AFYDQVETLSLEEKEKLQTYHLKSTVKLVYENVPFYRKAFQEVDVKPEDIQSLNDVQKLP 61 Query: 72 FTTKPDYINTLGPQAPFGKFMTVPQSEVRRMHFSSGTTSAPSPQFWSERDLDRWAGLYAR 131 FT K + L PF + VP +EV R+H SSGT+ P+ ++++DL+ W+ + AR Sbjct: 62 FTQK----HHLRENYPF-HLLAVPLNEVVRLHGSSGTSGKPTVVAYTQKDLEHWSSIIAR 116 Query: 132 HARAQGIGPGDIVQCMFSYTWFVGGLGATAGYQRAGAMVIPAGSQDTGRQIDTLFTYGST 191 G GD++ + Y F GGLG G ++ G + +P +T RQI + + Sbjct: 117 SIYMAGGRKGDLLHNAYGYGLFTGGLGLHGGSEKLGCVTVPISGGNTQRQITLIQDFKPR 176 Query: 192 VLCGTPSFITHLAEEVRKRGRDPAASTVRSIMMGGEPGASIPATRRRIEALWGARAYDAY 251 V+CGTPS+I ++ E ++K G DPA+++++ ++G EP + R+ +E ++ +A D Y Sbjct: 177 VICGTPSYIMNIGETMKKMGIDPASTSIQYAILGSEPWSE--EMRKNLETMFNMKAMDIY 234 Query: 252 GCLE-FQPIAG-DCT-AQAGPHLAEDFAYAEIVDAETGAAVADGTPGVLVLTHLDKQAGP 308 G E P G +C Q G H+A+D Y EI+D T + DG G LV T L K+A P Sbjct: 235 GLSEVIGPGVGMECVECQNGLHIADDHFYPEIIDPITLECLPDGEEGELVFTTLQKEALP 294 Query: 309 LVRWWTGDIVLRDATPCSCGRTHARL--VGG--XSMLVVRGVNIFPSAVEELVRATPGLG 364 ++R+ TGDI PC CGRT AR+ V G ML++RGVN+FPS +E+ + L Sbjct: 295 VIRYRTGDIASLTREPCECGRTTARMSRVKGRVDDMLIIRGVNVFPSEIEQCILKMDELD 354 Query: 365 DEYQ--LVINASVHDAAGFMKSIHVRVEQTDASADA------AQLTALAAQLTQEIKQRL 416 YQ LV N ++ + A +HV ++ + D + L ++ Q +KQ + Sbjct: 355 CHYQLHLVKNGALDEVA-----LHVELKDEYYTLDLHGDLNHPHASLLKGKIQQTLKQEM 409 Query: 417 HVGAHVEVLPQGTLARSTHKAKRVV 441 V V + GTL R KAKR+V Sbjct: 410 LVSMDVHLKEPGTLPRFEGKAKRIV 434 >MA2244 [H] COG1541 Coenzyme F390 synthetase Mac Methanosarcina acetivorans str.C2A Length = 433 Score = 246 bits (627), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 144/431 (33%), Positives = 243/431 (56%), Gaps = 19/431 (4%) Query: 18 ESWDRATLEAFQLEQLRVQLARLARDSA-YYAPLFRQLDWNVGELRSLADLSKLPFTTKP 76 E+ + L QL++L+ A+L D+ +Y F++ ++++L D+ KLPFT K Sbjct: 9 ETMNPGELRRLQLKRLQ-NSAKLVYDNVPFYRQKFKEAGVTPEDIKTLEDVRKLPFTRKA 67 Query: 77 DYINTLGPQAPFGKFMTVPQSEVRRMHFSSGTTSAPSPQFWSERDLDRWAGLYARHARAQ 136 L PFG F + ++ R+H SSGT+ P+ ++ +D++ W+ L AR Sbjct: 68 ----YLRENYPFGLF-AAKKEDIVRIHASSGTSGKPTVVGYTAKDIETWSDLIARSLTMI 122 Query: 137 GIGPGDIVQCMFSYTWFVGGLGATAGYQRAGAMVIPAGSQDTGRQIDTLFTYGSTVLCGT 196 G+ GD+VQ +Y F GGLG G +R GAM++PA + +T RQ++ + +G T + T Sbjct: 123 GLSKGDVVQNAMNYGLFTGGLGFHYGVERMGAMIVPAATGNTARQLEMMIDFGVTAVHCT 182 Query: 197 PSFITHLAEEVRKRGRDPAASTVRSIMMGGEPGASIPATRRRIEALWGARAYDAYGCLE- 255 PS+ +LAE + G S +++ + GGEP + TR+++E +AYD YG E Sbjct: 183 PSYAFYLAETAEELGLIDKLS-LKAAIFGGEPWSE--NTRKQLEKRLNLKAYDCYGLSEM 239 Query: 256 FQPIAG-DCTAQAGPHLAEDFAYAEIVDAETGAAVADGTPGVLVLTHLDKQAGPLVRWWT 314 F P G +C Q G H+ D E++D E G VA+G G LVLT L+K+ +R+ T Sbjct: 240 FGPGVGFECQEQNGLHIWSDNFLVEVLD-ENGEQVAEGEKGELVLTSLNKEGFCNIRYRT 298 Query: 315 GDIVLRDATPCSCGRTH---ARLVG-GXSMLVVRGVNIFPSAVEELVRATPGLGDEYQLV 370 GD+ + C CGRT +RL+G M++VRG+N+FPS +++++ P +G+ +QL+ Sbjct: 299 GDMTKLLESECDCGRTTTRISRLLGRADDMMIVRGINVFPSQIQDVISRIPEVGEHFQLI 358 Query: 371 INASVHDAAGFMKSIHVRVEQTDASADAAQLTALAAQLTQEIKQRLHVGAHVEVLPQGTL 430 ++ + H +I V +E+ + D L A+ + +E+K L++ +VE+L +G++ Sbjct: 359 LDRNKHMLDEL--TIEVELEENAFTGDLKDLKAVQDHVQRELKSVLNIRTNVELLEKGSI 416 Query: 431 ARSTHKAKRVV 441 R+ KAKR++ Sbjct: 417 ERTAGKAKRII 427