BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0211.p (250 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PM1327 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 196 5e-50 AGc5111 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 184 1e-46 YPO2499 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 184 2e-46 L83296 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 181 1e-45 BMEII0433 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-ty... 179 4e-45 >PM1327 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Pmu Pasteurella multocida Length = 347 Score = 196 bits (498), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 118/258 (45%), Positives = 163/258 (63%), Gaps = 20/258 (7%) Query: 5 SVMAGVFLTYWGL------PIYF--------GIFAAIFFGALCGWTSGMLIAKLKVPPFI 50 +V GVF T+WG+ P F I A IF G LCG+ +G++I KV PFI Sbjct: 80 AVCLGVF-THWGMDWLGENPSSFSVLMIVISAIIATIFVGILCGYVNGLVIVYGKVTPFI 138 Query: 51 ATLGMMMLLKGLSLVISGTKPIY-FNDTPSFPQISQESLIGDLIPALPIPNAVLILFLVA 109 TLGMM + +GL+L IS K IY F DT F + +L ALP+P V+I LV Sbjct: 139 TTLGMMGIARGLALTISDGKTIYNFPDTLRFLGNGRIALTETF--ALPVP--VIIALLVV 194 Query: 110 IAAGVILNKTVFGRYTFALGSNEEALRLSGVKVDFWKVTVYTVSGAICGIAGLLIASRLN 169 + + +L +T+FGR +ALG N EA+RLSG+ ++ ++ Y ++GA+ I +++ RLN Sbjct: 195 LVSFYVLTQTMFGRQIYALGGNREAVRLSGINIEKLEIKAYVINGALAAIGAIILVGRLN 254 Query: 170 SAQPALGQGYELDAIAAVVIGGTSLSGGTGTILGTIIGAFIMSVLINGLRIMSVAQEWQT 229 +AQP G GYELDAIAA VIGGTSL GG G+++ T IGA IM VL NGL +++V Q Sbjct: 255 AAQPIAGNGYELDAIAATVIGGTSLMGGVGSVVSTSIGALIMGVLQNGLTLLNVTSYLQR 314 Query: 230 VVTGVIIILAVYMDILRR 247 ++ G++IILAV++D LRR Sbjct: 315 LIIGLVIILAVFLDQLRR 332 >AGc5111 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 344 Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 103/245 (42%), Positives = 159/245 (64%), Gaps = 14/245 (5%) Query: 16 GLPIYFGIFAAIFFGALCGWTSGMLIAKLKVPPFIATLGMMMLLKGLSLVISGTKPIYFN 75 G+P+ G+ I G+LCG +G+L+ + K+PPFIATLGMM++ +G++L I+G + + Sbjct: 103 GMPVPIGMLLGILTGSLCGLINGLLVTRFKLPPFIATLGMMLIARGVALQITGARAVS-G 161 Query: 76 DTPSFPQISQESL-----IGD------LIPALPIPNAVLILFLVAIAAGVILNKTVFGRY 124 SF ++ +L IGD + P +P P V+++ ++A+A +LN+++ GR+ Sbjct: 162 LGESFGELGNGALFRIVTIGDDGFPNVVFPGIPYP--VILMVVIALAVSFMLNRSILGRH 219 Query: 125 TFALGSNEEALRLSGVKVDFWKVTVYTVSGAICGIAGLLIASRLNSAQPALGQGYELDAI 184 +A+GSN +A RLSGV V Y +SG + G+ G ++ SRL +AQP G YELDAI Sbjct: 220 IYAVGSNADAARLSGVNVARVTNFTYILSGTLAGLTGCVLMSRLVTAQPNEGVMYELDAI 279 Query: 185 AAVVIGGTSLSGGTGTILGTIIGAFIMSVLINGLRIMSVAQEWQTVVTGVIIILAVYMDI 244 A+ VIGGTSL GG GTI GT IGAF++ +L NGL + V+ Q ++ G++I++ V++D Sbjct: 280 ASAVIGGTSLIGGVGTISGTAIGAFVIGILRNGLNMNGVSAFTQQIIIGLVILVTVWIDQ 339 Query: 245 LRRRR 249 LR RR Sbjct: 340 LRNRR 344 >YPO2499 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ype Yersinia pestis Length = 330 Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 110/245 (44%), Positives = 159/245 (64%), Gaps = 12/245 (4%) Query: 5 SVMAGVFLTYWGLPIYFGIFAAIFFGALCGWTSGMLIAKLKVPPFIATLGMMMLLKGLSL 64 S+ AG+ L G+PI + AA+ GAL G +G IA L++PP I TL M + +GL+L Sbjct: 97 SIAAGLMLA--GIPIPLAMMAALLVGALFGLANGSCIAYLRMPPIIVTLASMGIARGLAL 154 Query: 65 VISGTKPIY-FNDTPSFPQISQESLIGDLIPALPIPNAVLILFLVAIAAGVILNKTVFGR 123 + +G PI D SF + +++G +P +LI+ V + A ++LN FGR Sbjct: 155 LYTGGYPISGLPDMFSF--FGRGTVLGIQVP-------ILIMAGVYLFAWIMLNHLSFGR 205 Query: 124 YTFALGSNEEALRLSGVKVDFWKVTVYTVSGAICGIAGLLIASRLNSAQPALGQGYELDA 183 Y +A+G NEEA RLSG++V +K+ VY VSG +AGL++ SRL S QP G+G+ELDA Sbjct: 206 YIYAIGGNEEAARLSGIRVSRYKMLVYVVSGLTAALAGLVLTSRLMSGQPNAGEGFELDA 265 Query: 184 IAAVVIGGTSLSGGTGTILGTIIGAFIMSVLINGLRIMSVAQEWQTVVTGVIIILAVYMD 243 IAAVV+GG ++SGG G I+GT++GA ++ VL NGL +MSV+ Q VV G II+ A+Y+ Sbjct: 266 IAAVVLGGAAISGGKGAIIGTLVGAMMLGVLNNGLNLMSVSPYIQNVVKGGIILAAIYLS 325 Query: 244 ILRRR 248 +RR+ Sbjct: 326 SVRRK 330 >L83296 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Lla Lactococcus lactis Length = 313 Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 103/236 (43%), Positives = 153/236 (64%), Gaps = 8/236 (3%) Query: 16 GLPIYFGIFAAIFFGALCGWTSGMLIAKLKVPPFIATLGMMMLLKGLSLVISGTKPIYFN 75 G+P+ + A+ GA G +G LIA K+ PFI TL M+ +G +LV + PI + Sbjct: 85 GMPLPLAVVCALIIGAFLGAINGALIAYGKLAPFIVTLATQMVYRGATLVFTDGNPITKH 144 Query: 76 -DTPSFPQISQESLIGDLIPALPIPNAVLILFLVAIAAGVILNKTVFGRYTFALGSNEEA 134 D I Q L+G IP V+++ LV I ++L+KT FG+ +ALG NE+A Sbjct: 145 MDGYFLAYIGQGYLLG-------IPFPVILMILVFIVLWILLHKTAFGKSVYALGGNEKA 197 Query: 135 LRLSGVKVDFWKVTVYTVSGAICGIAGLLIASRLNSAQPALGQGYELDAIAAVVIGGTSL 194 +SG+K++ K+ +YT+SGA+ I+GL+I+SRL+SA P G GYE+ AIAAVV+GGTSL Sbjct: 198 AYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQAGSGYEMYAIAAVVLGGTSL 257 Query: 195 SGGTGTILGTIIGAFIMSVLINGLRIMSVAQEWQTVVTGVIIILAVYMDILRRRRQ 250 GG G + GT+IG I+ VL NGL I+ V+ WQ V+ G++I++AV +D++R +R+ Sbjct: 258 MGGKGRMFGTMIGVLIIGVLNNGLNIIGVSAFWQQVIQGLVILVAVLIDVIRSKRK 313 >BMEII0433 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bme Brucella melitensis Length = 346 Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 106/252 (42%), Positives = 161/252 (63%), Gaps = 11/252 (4%) Query: 6 VMAGVFLTYWGLPIYFGIFAAIF----FGALCGWTSGMLIAKLKVPPFIATLGMMMLLKG 61 +M GV L +G+ +YF ++A + GA G +G+LIA L+VP F+ATLG++ +G Sbjct: 99 LMQGVTLQEFGIILYFPVWAVVLITCALGAFVGAVNGVLIAYLRVPAFVATLGVLYCARG 158 Query: 62 LSLVISGTKPIYFNDTPSFPQISQESLIGDLI---PALPIPNAVLILFLVAIAAGVILNK 118 ++L++ T + +N+ P++ D + +P VL+L ++AI ++LN+ Sbjct: 159 VALLM--TNGLTYNNLGGRPELGNTGF--DWLGFNKLFGVPIGVLVLAILAIICAIVLNR 214 Query: 119 TVFGRYTFALGSNEEALRLSGVKVDFWKVTVYTVSGAICGIAGLLIASRLNSAQPALGQG 178 T FGR+ +A G NE A LSGV V KV+VY +SG IAGL+++S+L SA P G Sbjct: 215 TAFGRWLYASGGNERAAELSGVPVKRVKVSVYVISGICAAIAGLVLSSQLTSAGPTAGTT 274 Query: 179 YELDAIAAVVIGGTSLSGGTGTILGTIIGAFIMSVLINGLRIMSVAQEWQTVVTGVIIIL 238 YEL AIAAVVIGG +L+GG GTI GT++GAF++ L +GL I+ V+ WQTV TG +I+L Sbjct: 275 YELTAIAAVVIGGAALTGGRGTIQGTLLGAFVIGFLSDGLVIIGVSSYWQTVFTGAVIVL 334 Query: 239 AVYMDILRRRRQ 250 AV ++ ++ R+ Sbjct: 335 AVLLNSIQYSRR 346