BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0208.p         (95 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN1166 [G] COG1129 ABC-type sugar transport system, ATPase compo...    68   5e-12
STM2189 [G] COG1129 ABC-type sugar transport system, ATPase comp...    64   1e-10
mlr6802 [R] COG3845 ABC-type uncharacterized transport systems, ...    63   1e-10
YPO1508 [G] COG1129 ABC-type sugar transport system, ATPase comp...    62   2e-10
AGc5112 [G] COG1129 ABC-type sugar transport system, ATPase comp...    62   3e-10

>FN1166 [G] COG1129 ABC-type sugar transport system, ATPase component Fnu
          Fusobacterium nucleatum
          Length = 500

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/46 (65%), Positives = 37/46 (80%)

Query: 34 YLISLRNVTKRFPGVLALDNCQLDLLPGEVHALMGENGAGKSTLXR 79
          Y++ + N++K FPGV ALD+ QL L PG VHALMGENGAGKSTL +
Sbjct: 6  YVLEMENISKEFPGVKALDDVQLKLKPGTVHALMGENGAGKSTLMK 51


>STM2189 [G] COG1129 ABC-type sugar transport system, ATPase component Sty
          Salmonella typhimurium LT2
          Length = 506

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 34 YLISLRNVTKRFPGVLALDNCQLDLLPGEVHALMGENGAGKSTLXR 79
          YL+ +R + K FPGV ALDN  L++ P  +HALMGENGAGKSTL +
Sbjct: 12 YLLEMRGINKSFPGVKALDNVNLNVRPHSIHALMGENGAGKSTLLK 57


>mlr6802 [R] COG3845 ABC-type uncharacterized transport systems, ATPase
          components Mlo Mesorhizobium loti
          Length = 539

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 35 LISLRNVTKRFPGVLALDNCQLDLLPGEVHALMGENGAGKSTL 77
          +++L  VTKRFPG++A D+  L + PGEVH L+GENGAGKSTL
Sbjct: 31 IVALEGVTKRFPGIVANDSVDLSIRPGEVHVLLGENGAGKSTL 73


>YPO1508 [G] COG1129 ABC-type sugar transport system, ATPase component Ype
          Yersinia pestis
          Length = 506

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 37/55 (67%)

Query: 25 NTETANESGYLISLRNVTKRFPGVLALDNCQLDLLPGEVHALMGENGAGKSTLXR 79
          +  TA    +L+ + N+ K FPGV ALDN  L + P  +HALMGENGAGKSTL +
Sbjct: 3  DINTAQPRDWLLEMSNIDKSFPGVKALDNVNLKVRPYSIHALMGENGAGKSTLLK 57


>AGc5112 [G] COG1129 ABC-type sugar transport system, ATPase component Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 521

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 34/49 (69%)

Query: 31 ESGYLISLRNVTKRFPGVLALDNCQLDLLPGEVHALMGENGAGKSTLXR 79
          E   L+ L N++K FPGV AL N   DL  GEVHA+ GENGAGKSTL +
Sbjct: 21 ERSVLLRLENISKEFPGVKALSNVHFDLRSGEVHAVCGENGAGKSTLMK 69