BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0188.p (377 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 421 e-117 PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 353 4e-97 RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 348 8e-96 CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibri... 346 5e-95 NMB1714 [MU] COG1538 Outer membrane protein Nme Neisseria mening... 322 8e-88 >RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 514 Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust. Identities = 223/377 (59%), Positives = 283/377 (75%), Gaps = 4/377 (1%) Query: 1 LLPTLNATGSESRTRLSASQSTTGAPLITKSYQVGLAIPAYELDFFGRVRSLKDAALSTY 60 LLP +NAT + +R+ S S TG + TK YQ+G+ I Y+++ F V + +A ++Y Sbjct: 115 LLPPINATATYTRSLTPQSISQTGQDINTKQYQLGVGISNYQVNLFS-VGDVTSSARASY 173 Query: 61 LSTEEARQSVQISLVSQVAQAYLTERSYAEQLKLAQQTLESRQSNLGLAQKRFDVGASSA 120 L+TEE +++ QISL+SQVA+AYL ER+YAEQL+LAQQTL+ R+ LA++RFDVGASSA Sbjct: 174 LATEEGQRATQISLISQVAKAYLNERAYAEQLELAQQTLKGREDYYKLAKQRFDVGASSA 233 Query: 121 LDLRLSDTLVQSARTSVATLLRQRAQAENALTLLVGTNVK-DLPAGQDLSLQNIVTDIPA 179 LDLR ++TLV+SAR SVA L RQ AQA NAL LLVG+ + DLP +S + IV DIP Sbjct: 234 LDLRQNETLVESARVSVAQLTRQYAQATNALVLLVGSPLPADLPPPTTVSSEKIVADIPP 293 Query: 180 GVPSDLLTRRPDIRSAEQKLLAANANIGAARAAFFPRISLTGSFGSASNSLGGLFDSGSG 239 G+PS+LL +RPDIR AEQKL+AANANIG ARAAFFP + LT + G+AS +L LF SG+G Sbjct: 294 GLPSELLEQRPDIRQAEQKLVAANANIGVARAAFFPSLGLTSNVGTASTALHDLFKSGTG 353 Query: 240 AWSYGPQLSLPIFDFGRNSANLDVAEVRKNQAIVTYEKTIQTAFREVADALVARGTLDEQ 299 WS+ P L+LPIF++G N NLD+ + + A+ YEKTIQTAF+EV+DALVARGTLDEQ Sbjct: 354 LWSFVPNLTLPIFNWGTNVFNLDLTKANQKIAVANYEKTIQTAFQEVSDALVARGTLDEQ 413 Query: 300 IEAQEAFLKAQQERLNLTDLRYKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDL 359 + AQ+ F A ERL L+D RY+NG++S LD LDAQRDLFSA Q L+Q R RL NA+DL Sbjct: 414 VAAQKRFRDATAERLTLSDQRYRNGVSSFLDVLDAQRDLFSADQTLVQTRLARLTNAVDL 473 Query: 360 YRALGGGLNE--TTVAA 374 Y ALGGGL E TTVAA Sbjct: 474 YTALGGGLQEHSTTVAA 490 >PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 485 Score = 353 bits (906), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 189/369 (51%), Positives = 254/369 (68%), Gaps = 2/369 (0%) Query: 1 LLPTLNATGSESRTRLSASQSTTGAPLITKSYQVGLAIPAYELDFFGRVRSLKDAALSTY 60 L P + GS +R RL STTG+P I+ Y V L A+ELD FGR+RSL+D AL Y Sbjct: 101 LFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYGVTLGTTAWELDLFGRLRSLRDQALEQY 160 Query: 61 LSTEEARQSVQISLVSQVAQAYLTERSYAEQLKLAQQTLESRQSNLGLAQKRFDVGASSA 120 L+TE+A++S Q +LV+ VA AYLT ++ QL+L + TL + Q + L Q+ +DVG +SA Sbjct: 161 LATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASA 220 Query: 121 LDLRLSDTLVQSARTSVATLLRQRAQAENALTLLVGTNVK-DLPAGQDLSLQNIVTDIPA 179 LDLR + T V+ AR ++A R AQ +NAL LL+G+ + +LP G L Q ++T++PA Sbjct: 221 LDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGSGIPANLPQGLGLD-QTLLTEVPA 279 Query: 180 GVPSDLLTRRPDIRSAEQKLLAANANIGAARAAFFPRISLTGSFGSASNSLGGLFDSGSG 239 G+PSDLL RRPDI AE +L+AANA+IGAARAAFFP ISLT + G+ S L GLFD+GSG Sbjct: 280 GLPSDLLQRRPDILEAEHQLMAANASIGAARAAFFPSISLTANAGTMSRQLSGLFDAGSG 339 Query: 240 AWSYGPQLSLPIFDFGRNSANLDVAEVRKNQAIVTYEKTIQTAFREVADALVARGTLDEQ 299 +W + P ++LPIF G A+LD A+++K+ + YEK IQTAF+EVAD L ARGT EQ Sbjct: 340 SWLFQPSINLPIFTAGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQ 399 Query: 300 IEAQEAFLKAQQERLNLTDLRYKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDL 359 ++AQ +KA E L D RY+ G+ + L LDAQR LF+AQQ LI R +L + ++L Sbjct: 400 LQAQRDLVKASDEYYQLADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNL 459 Query: 360 YRALGGGLN 368 Y+ALGGG N Sbjct: 460 YKALGGGWN 468 >RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 491 Score = 348 bits (894), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 198/382 (51%), Positives = 248/382 (64%), Gaps = 7/382 (1%) Query: 1 LLPTLNATGSESRTRLSASQSTTGAPLITKSYQVGLAIPAYELDFFGRVRSLKDAALSTY 60 L PT+ A+GSES +R A+ S TG P+++ +Y L AYELD FGRVRSL AL Y Sbjct: 103 LFPTVKASGSESASRTPAALSATGQPVVSHTYSATLGFSAYELDLFGRVRSLSAQALEQY 162 Query: 61 LSTEEARQSVQISLVSQVAQAYLTERSYAEQLKLAQQTLESRQSNLGLAQKRFDVGASSA 120 L+T EAR+S QISLV++VA AYLT + + LKLAQ TL S+ L Q+ +++G +S Sbjct: 163 LATVEARRSSQISLVAEVATAYLTLAADQDLLKLAQDTLSSQSDTYRLNQRSYELGTASR 222 Query: 121 LDLRLSDTLVQSARTSVATLLRQRAQAENALTLLVGTNV------KDLPAGQDLSLQNIV 174 L LR S T V +AR V Q AQ NAL LLVG +V + LP S +++ Sbjct: 223 LTLRQSQTSVDAARVDVERYTAQVAQDRNALVLLVGADVPAELLPRSLPDPSAAS-GSVL 281 Query: 175 TDIPAGVPSDLLTRRPDIRSAEQKLLAANANIGAARAAFFPRISLTGSFGSASNSLGGLF 234 IP G+ SDLL RRPDI AE L AANANIGAARAAFFP ISLT S G++S SL GLF Sbjct: 282 ATIPPGLASDLLQRRPDILQAEHDLKAANANIGAARAAFFPSISLTASAGTSSASLAGLF 341 Query: 235 DSGSGAWSYGPQLSLPIFDFGRNSANLDVAEVRKNQAIVTYEKTIQTAFREVADALVARG 294 GSG WS+GPQ+SLPIFD G N ANLD+A ++ A+ YEK IQTAFREV+DAL RG Sbjct: 342 KGGSGVWSFGPQISLPIFDGGANRANLDIANASRDIALAQYEKAIQTAFREVSDALAQRG 401 Query: 295 TLDEQIEAQEAFLKAQQERLNLTDLRYKNGIASSLDQLDAQRDLFSAQQALIQARQLRLN 354 TL Q++AQ++ + A + L R+K G+ S L+ LD+QR L++AQQ LI R RL Sbjct: 402 TLGRQLDAQQSLVDATSDSYQLATARFKRGVDSYLNVLDSQRSLYTAQQNLINTRLSRLT 461 Query: 355 NAIDLYRALGGGLNETTVAAAA 376 N Y+ LGGG ET+ A A Sbjct: 462 NLATFYKTLGGGWVETSGAPVA 483 >CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibrioides Length = 467 Score = 346 bits (888), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 190/372 (51%), Positives = 254/372 (68%), Gaps = 3/372 (0%) Query: 1 LLPTLNATGSESRTRLSASQSTTGAPLITKSYQVGLAIPAYELDFFGRVRSLKDAALSTY 60 L P ++ SE R R AS S TG P T + + AYELD FGRVRSLKDAAL +Y Sbjct: 97 LFPGVSGAVSEQRGRTPASTSPTGQPFETDVFNATIGFTAYELDLFGRVRSLKDAALQSY 156 Query: 61 LSTEEARQSVQISLVSQVAQAYLTERSYAEQLKLAQQTLESRQSNLGLAQKRFDVGASSA 120 L+TE+ +SV++SL++++A A+LT + E+L LA+ TL +R+ +L L ++R D GA S Sbjct: 157 LATEQTSRSVRVSLIAEIANAWLTLAADQERLALAKTTLATREDSLRLVRQRVDGGAGSL 216 Query: 121 LDLRLSDTLVQSARTSVATLLRQRAQAENALTLLVGTN--VKDLPAGQDLSLQNIVTDIP 178 LDLR ++TL ++AR VA Q AQ NALTLL G + V LP G+ L +++ D+P Sbjct: 217 LDLRNAETLAETARADVAVYTAQVAQDRNALTLLAGGDLPVDLLPPGR-LDADSVLADLP 275 Query: 179 AGVPSDLLTRRPDIRSAEQKLLAANANIGAARAAFFPRISLTGSFGSASNSLGGLFDSGS 238 AG+PSD+L RRPD+ +AE++L AANANIGAARAAFFPRISLTGS GSAS L GLF SG+ Sbjct: 276 AGLPSDVLARRPDVLAAERQLQAANANIGAARAAFFPRISLTGSAGSASTDLDGLFKSGT 335 Query: 239 GAWSYGPQLSLPIFDFGRNSANLDVAEVRKNQAIVTYEKTIQTAFREVADALVARGTLDE 298 WS+ PQ+SLPIF G N ANL++++ ++ A+ TYEKT+QTAFREV+DAL R T+ + Sbjct: 336 SIWSFTPQISLPIFAGGANVANLNISKADRDIAVATYEKTVQTAFREVSDALSVRATVAD 395 Query: 299 QIEAQEAFLKAQQERLNLTDLRYKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAID 358 ++ AQE A + L+ R G+ S+L LDAQR L++AQQ LI AR + N + Sbjct: 396 RLTAQERLTAAAADSTRLSQQRRDAGLDSALTLLDAQRSLYTAQQGLISARLAQATNLVT 455 Query: 359 LYRALGGGLNET 370 LY+ LGGG T Sbjct: 456 LYKTLGGGAPAT 467 >NMB1714 [MU] COG1538 Outer membrane protein Nme Neisseria meningitidis MC58 Length = 467 Score = 322 bits (826), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 173/372 (46%), Positives = 239/372 (64%), Gaps = 7/372 (1%) Query: 1 LLPTLNATGSESRTRLSASQSTTGAPLITKSYQVGLAIPAYELDFFGRVRSLKDAALSTY 60 LLPTL A ++SR Q + ++ SY+VGL +YELD FGRVRS +AAL Y Sbjct: 98 LLPTLAANANDSR------QGSLSGGNVSSSYKVGLGAASYELDLFGRVRSSSEAALQGY 151 Query: 61 LSTEEARQSVQISLVSQVAQAYLTERSYAEQLKLAQQTLESRQSNLGLAQKRFDVGASSA 120 ++ R + +SL++ VA+AY ER E + LAQ+ L++R+ L++ R+ G SA Sbjct: 152 FASTANRDAAHLSLIATVAKAYFNERYAEEAMSLAQRVLKTREETYKLSELRYKAGVISA 211 Query: 121 LDLRLSDTLVQSARTSVATLLRQRAQAENALTLLVGTNV-KDLPAGQDLSLQNIVTDIPA 179 + LR + L++SA+ A R R QA NAL L+ + +DLPAG L Q V +PA Sbjct: 212 VALRQQEALIESAKADYAHAARSREQARNALATLINQPIPEDLPAGLPLDKQFFVEKLPA 271 Query: 180 GVPSDLLTRRPDIRSAEQKLLAANANIGAARAAFFPRISLTGSFGSASNSLGGLFDSGSG 239 G+ S++L RPDIR+AE L ANANIGAARAAFFP I LTG+ G+ S LGGLF SG+G Sbjct: 272 GLSSEVLLDRPDIRAAEHALKQANANIGAARAAFFPSIRLTGTVGTGSAELGGLFKSGTG 331 Query: 240 AWSYGPQLSLPIFDFGRNSANLDVAEVRKNQAIVTYEKTIQTAFREVADALVARGTLDEQ 299 WS+ P ++LPIF +G N ANLDVA++R+ IV YE +Q+AF++VA+AL AR LD+ Sbjct: 332 VWSFAPSITLPIFTWGTNKANLDVAKLRQQVQIVAYESAVQSAFQDVANALAAREQLDKA 391 Query: 300 IEAQEAFLKAQQERLNLTDLRYKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDL 359 +A +A +E L L LRYK+G++ +LD LDA+R ++A+ A + A+ R N DL Sbjct: 392 YDALSKQSRASKEALRLVGLRYKHGVSGALDLLDAERSSYAAEGAALSAQLTRAENLADL 451 Query: 360 YRALGGGLNETT 371 Y+ALGGGL T Sbjct: 452 YKALGGGLKRDT 463