BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0141.p         (130 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0676 [L] COG0816 Predicted endonuclease involved in recombina...   127   6e-30
YPO0937 [L] COG0816 Predicted endonuclease involved in recombina...   111   4e-25
ZyqgF [L] COG0816 Predicted endonuclease involved in recombinati...   111   5e-25
ECs3825 [L] COG0816 Predicted endonuclease involved in recombina...   111   5e-25
yqgF [L] COG0816 Predicted endonuclease involved in recombinatio...   110   8e-25

>RSc0676 [L] COG0816 Predicted endonuclease involved in recombination
           (possible Holliday junction resolvase in Mycoplasmas and
           B. subtilis) Rso Ralstonia solanacearum
          Length = 144

 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 88/128 (68%), Gaps = 4/128 (3%)

Query: 3   TLLAFDFGLKRIGVAIGNTLIKQAQPLTIISAATNDAKFAELGKLISEWTPARCIVGLPS 62
           TLLAFD+G KRIGVA+GN++ + A+ L +I   + + +F ++ +L++ W P   +VG+P 
Sbjct: 17  TLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITRLVNAWQPVGFVVGMPV 76

Query: 63  HPDGAEHEMTVRCRRFANQLHGRFGVETVLVDERYSSAVIEQRRG---EHIDAEAAAIIL 119
           HP+G +  M    +RF NQLHGR+G+    VDERYSS +  Q  G   + +DAEAA IIL
Sbjct: 77  HPEGEDQPMIKLAKRFGNQLHGRYGLPVTWVDERYSS-IAAQDAGATDDVLDAEAARIIL 135

Query: 120 QQYFDDTH 127
           QQ+FD++H
Sbjct: 136 QQFFDESH 143


>YPO0937 [L] COG0816 Predicted endonuclease involved in recombination
           (possible Holliday junction resolvase in Mycoplasmas and
           B. subtilis) Ype Yersinia pestis
          Length = 140

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/135 (44%), Positives = 81/135 (60%), Gaps = 14/135 (10%)

Query: 3   TLLAFDFGLKRIGVAIGNTLIKQAQPLTIISAATNDAKFAELGKLISEWTPARCIVGLPS 62
           T++AFDFG K IGVAIG  +   A+ LT   A      + ++ KL+ EW P   +VGLP 
Sbjct: 5   TIIAFDFGTKSIGVAIGQEVTGTARALTAFKAQDGTPDWQQVEKLLKEWQPNLVVVGLPL 64

Query: 63  HPDGAEHEMTVRCRRFANQLHGRFGVETVLVDERYSSAVIEQR-----RGEH-------I 110
           + DG E  +T R RRFAN+LHGRFGV+  L DER S+  +E R     RG +       +
Sbjct: 65  NMDGTEQPLTARARRFANRLHGRFGVQVALQDERLST--VEARANLFDRGGYRALDKGSV 122

Query: 111 DAEAAAIILQQYFDD 125
           DA +A IIL+ +FD+
Sbjct: 123 DAASAVIILESWFDE 137


>ZyqgF [L] COG0816 Predicted endonuclease involved in recombination
           (possible Holliday junction resolvase in Mycoplasmas and
           B. subtilis) EcZ Escherichia coli O157:H7 EDL933
          Length = 138

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 79/137 (57%), Gaps = 14/137 (10%)

Query: 3   TLLAFDFGLKRIGVAIGNTLIKQAQPLTIISAATNDAKFAELGKLISEWTPARCIVGLPS 62
           TLLAFDFG K IGVA+G  +   A+PL  I A      +  + +L+ EW P   IVGLP 
Sbjct: 4   TLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPL 63

Query: 63  HPDGAEHEMTVRCRRFANQLHGRFGVETVLVDERYSSAVIEQRRG------------EHI 110
           + DG E  +T R R+FAN++HGRFGVE  L DER S+  +E R G              I
Sbjct: 64  NMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLST--VEARSGLFEQGGYRALNKGKI 121

Query: 111 DAEAAAIILQQYFDDTH 127
           D+ +A IIL+ YF+  +
Sbjct: 122 DSASAVIILESYFEQGY 138


>ECs3825 [L] COG0816 Predicted endonuclease involved in recombination
           (possible Holliday junction resolvase in Mycoplasmas and
           B. subtilis) Ecs Escherichia coli O157:H7
          Length = 138

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 79/137 (57%), Gaps = 14/137 (10%)

Query: 3   TLLAFDFGLKRIGVAIGNTLIKQAQPLTIISAATNDAKFAELGKLISEWTPARCIVGLPS 62
           TLLAFDFG K IGVA+G  +   A+PL  I A      +  + +L+ EW P   IVGLP 
Sbjct: 4   TLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPL 63

Query: 63  HPDGAEHEMTVRCRRFANQLHGRFGVETVLVDERYSSAVIEQRRG------------EHI 110
           + DG E  +T R R+FAN++HGRFGVE  L DER S+  +E R G              I
Sbjct: 64  NMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLST--VEARSGLFEQGGYRALNKGKI 121

Query: 111 DAEAAAIILQQYFDDTH 127
           D+ +A IIL+ YF+  +
Sbjct: 122 DSASAVIILESYFEQGY 138


>yqgF [L] COG0816 Predicted endonuclease involved in recombination
           (possible Holliday junction resolvase in Mycoplasmas and
           B. subtilis) Eco Escherichia coli K12
          Length = 138

 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 79/137 (57%), Gaps = 14/137 (10%)

Query: 3   TLLAFDFGLKRIGVAIGNTLIKQAQPLTIISAATNDAKFAELGKLISEWTPARCIVGLPS 62
           TLLAFDFG K IGVA+G  +   A+PL  I A      +  + +L+ EW P   IVGLP 
Sbjct: 4   TLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPL 63

Query: 63  HPDGAEHEMTVRCRRFANQLHGRFGVETVLVDERYSSAVIEQRRG------------EHI 110
           + DG E  +T R R+FAN++HGRFGVE  L DER S+  +E R G              +
Sbjct: 64  NMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLST--VEARSGLFEQGGYRALNKGKV 121

Query: 111 DAEAAAIILQQYFDDTH 127
           D+ +A IIL+ YF+  +
Sbjct: 122 DSASAVIILESYFEQGY 138