BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0140.p (232 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0675 [K] COG1678 Putative transcriptional regulator Rso Ralst... 248 9e-66 NMB1336 [K] COG1678 Putative transcriptional regulator Nme Neiss... 187 1e-47 VC0467 [K] COG1678 Putative transcriptional regulator Vch Vibrio... 187 2e-47 NMA1550 [K] COG1678 Putative transcriptional regulator NmA Neiss... 185 6e-47 PA0405 [K] COG1678 Putative transcriptional regulator Pae Pseudo... 176 3e-44 >RSc0675 [K] COG1678 Putative transcriptional regulator Rso Ralstonia solanacearum Length = 190 Score = 248 bits (632), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 121/193 (62%), Positives = 149/193 (77%), Gaps = 8/193 (4%) Query: 40 AELDLTDHFLIAMPSMLDPVFGGTVVYLCEHNQNGALGVVINKPTDMTMDVLFDRINLKL 99 A ++LT+ FLIAMP M DP F GTVVYLCEHN+ GALG+VIN+P D+ + LFD+I+LKL Sbjct: 6 APINLTNQFLIAMPGMADPTFSGTVVYLCEHNERGALGLVINRPIDIDLATLFDKIDLKL 65 Query: 100 EIIHDTPEAKPGLYRSQVMFGGPVQVERGFVLHSAMDQFSSTLQVTEGISLTTSKDVLEA 159 EI P L V +GGPVQ ERGFVLH AM +SS+L V G+ +TTSKDVLEA Sbjct: 66 EI-------HP-LAEQPVYYGGPVQTERGFVLHDAMGSYSSSLTVPGGLEMTTSKDVLEA 117 Query: 160 VAHGDGPEQVLVSLGCSGWSAGQLEEELGRNGWLTVKADPAIIFDLPVEQRFTAALALLG 219 VA G GP++ +++LG +GWSAGQLEEE+GRNGWLTV+ADP IIF++P E+RF AAL LLG Sbjct: 118 VARGGGPQRFILTLGYAGWSAGQLEEEIGRNGWLTVQADPEIIFNVPAEERFAAALRLLG 177 Query: 220 IDPVMLSGDFGRA 232 I+P MLSG+ G A Sbjct: 178 INPAMLSGEAGHA 190 >NMB1336 [K] COG1678 Putative transcriptional regulator Nme Neisseria meningitidis MC58 Length = 182 Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 131/193 (67%), Gaps = 13/193 (6%) Query: 42 LDLTDHFLIAMPSMLDPVFGGTVVYLCEHNQNGALGVVINKPTDMTMDVLFDRI--NLKL 99 ++L++HFLIAMP M D F +VVY+C+H+++GALG+ INKP+ +TMD++F N+ + Sbjct: 1 MNLSNHFLIAMPDMEDAFFSQSVVYICKHDEDGALGIAINKPSPITMDMIFSATGKNIPM 60 Query: 100 EIIHDTPEAKPGLYRSQVMFGGPVQVERGFVLHSAMDQFSSTLQVTEGISLTTSKDVLEA 159 + HD+ VM GGPVQVERG+V+H+ + + S++ V++ I+LT+S+DV+E Sbjct: 61 RMQHDS-----------VMMGGPVQVERGYVVHTPIGNWQSSIGVSDNIALTSSRDVIEN 109 Query: 160 VAHGDGPEQVLVSLGCSGWSAGQLEEELGRNGWLTVKADPAIIFDLPVEQRFTAALALLG 219 ++ ++ L+S+G S WS GQLE EL N WLTV AD I+FD+P E R+ AA A LG Sbjct: 110 ISREGAVDKALISIGYSSWSKGQLERELADNAWLTVPADEHILFDIPYEHRYAAAFAKLG 169 Query: 220 IDPVMLSGDFGRA 232 IDP+ L G A Sbjct: 170 IDPLALFSGAGHA 182 >VC0467 [K] COG1678 Putative transcriptional regulator Vch Vibrio cholerae Length = 200 Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 130/191 (68%), Gaps = 4/191 (2%) Query: 42 LDLTDHFLIAMPSMLDPVFGGTVVYLCEHNQNGALGVVINKPTDMTMDVLFDRINLKLEI 101 ++LT+HFL+AMPSM DP F +V+Y+CEHNQ+GA+G++IN P D+T+ + +++++ Sbjct: 14 MNLTNHFLVAMPSMKDPYFKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQVDIEPAY 73 Query: 102 IHDTPEAKPGLYRSQVMFGGPVQVERGFVLHSAMDQFSSTLQVTEGISLTTSKDVLEAVA 161 P++ + V GGPV +RGF+LH D + S++++T+ I++TTSKD+L + Sbjct: 74 ----PQSHQENLKKPVFNGGPVSEDRGFILHRPRDHYESSMKMTDDIAVTTSKDILTVLG 129 Query: 162 HGDGPEQVLVSLGCSGWSAGQLEEELGRNGWLTVKADPAIIFDLPVEQRFTAALALLGID 221 PE +V+LG SGWSAGQLE EL N WLT++ADP +IF+ PV +++ A+ LGI Sbjct: 130 TEAEPEGYIVALGYSGWSAGQLEVELTENSWLTIEADPELIFNTPVHEKWQKAIQKLGIS 189 Query: 222 PVMLSGDFGRA 232 P LS D G A Sbjct: 190 PAQLSSDAGHA 200 >NMA1550 [K] COG1678 Putative transcriptional regulator NmA Neisseria meningitidis Z2491 Length = 182 Score = 185 bits (470), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 87/193 (45%), Positives = 130/193 (67%), Gaps = 13/193 (6%) Query: 42 LDLTDHFLIAMPSMLDPVFGGTVVYLCEHNQNGALGVVINKPTDMTMDVLFDRI--NLKL 99 ++L++HFL+AMP M D F +VVY+C+H+++GALG+ INKP+ +TMD++F N+ Sbjct: 1 MNLSNHFLVAMPDMEDAFFSQSVVYICKHDEDGALGIAINKPSPITMDMIFSATGKNIPF 60 Query: 100 EIIHDTPEAKPGLYRSQVMFGGPVQVERGFVLHSAMDQFSSTLQVTEGISLTTSKDVLEA 159 + HD+ VM GGPVQVERG+V+H+ + + S++ V++ I+LT+S+DV+E Sbjct: 61 RMQHDS-----------VMMGGPVQVERGYVVHTPIGNWQSSIGVSDNIALTSSRDVIEN 109 Query: 160 VAHGDGPEQVLVSLGCSGWSAGQLEEELGRNGWLTVKADPAIIFDLPVEQRFTAALALLG 219 ++ +++L+S+G S W GQLE EL N WLTV AD I+FD+P E R+ AA A LG Sbjct: 110 ISREGAVDKILISIGYSSWGKGQLERELADNAWLTVPADEHILFDIPYEHRYAAAFAKLG 169 Query: 220 IDPVMLSGDFGRA 232 IDP+ L G A Sbjct: 170 IDPLALFSGAGHA 182 >PA0405 [K] COG1678 Putative transcriptional regulator Pae Pseudomonas aeruginosa Length = 189 Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 93/192 (48%), Positives = 127/192 (66%), Gaps = 14/192 (7%) Query: 44 LTDHFLIAMPSMLDPVFGGTVVYLCEHNQNGALGVVINKPTDMTMDVLFDRINLKLEIIH 103 L HFLIAMP M DP F TV YL EHN+ GA+G+VIN+P+ + + + +++ Sbjct: 9 LKHHFLIAMPHMADPNFAQTVTYLVEHNEQGAMGLVINRPSGLNLAEVLEQLK------- 61 Query: 104 DTPEAKPGLYRSQ---VMFGGPVQVERGFVLHSAMDQFSSTLQVTEGISLTTSKDVLEAV 160 P+A P R Q + GGPVQ +RGFVLH + + STL++ E ++++TS+DVL A+ Sbjct: 62 --PDALPPA-RCQHIDIYNGGPVQTDRGFVLHPSGLSYQSTLELGE-LAMSTSQDVLFAI 117 Query: 161 AHGDGPEQVLVSLGCSGWSAGQLEEELGRNGWLTVKADPAIIFDLPVEQRFTAALALLGI 220 A G GPE+ L+SLG +GW AGQLE EL N WLT ADPAI+FDLP E+R +AA A LG+ Sbjct: 118 AAGTGPEKSLISLGYAGWEAGQLEAELSDNAWLTCPADPAILFDLPPEERLSAAAARLGV 177 Query: 221 DPVMLSGDFGRA 232 + +L+ G A Sbjct: 178 NLSLLTAQAGHA 189