BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0131.p (244 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 262 6e-70 RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 261 8e-70 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 260 2e-69 PA0176 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu... 259 4e-69 RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 259 5e-69 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 262 bits (669), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 138/207 (66%), Positives = 169/207 (81%) Query: 10 TXTVKQNAENAQQANQLAVAASDVAVQGGSIVSQVVQTMESINASSQKVVDIISVIDGIA 69 T TVKQNA+NAQ+A++LA AS VA +GG V + +QTM +IN SS+K+VDII VIDGIA Sbjct: 309 TSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDIIGVIDGIA 368 Query: 70 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGS 129 FQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKEIK LI DSVG V G+ Sbjct: 369 FQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDSVGHVSTGT 428 Query: 130 KLVEQAGVTMHDIVTSIRRVTDVMSEITSANSEQSSGIEQVNEAIIQIDDMTQQNAALVE 189 VE+AG + D+V I+ VT+++SEI++++ EQS GIEQ+NEAI Q+D TQ+NA+LVE Sbjct: 429 AKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKATQENASLVE 488 Query: 190 QAAAAAQSLQDQAANLTALVSVFKLDA 216 ++A AAQ+LQDQA L +VS FKL A Sbjct: 489 ESATAAQALQDQANQLADMVSTFKLHA 515 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 261 bits (668), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 154/204 (75%), Positives = 181/204 (88%) Query: 12 TVKQNAENAQQANQLAVAASDVAVQGGSIVSQVVQTMESINASSQKVVDIISVIDGIAFQ 71 TV+QNA+NA QANQLAV+ASDVAV+GG +VS+VV+TM SINASS+K+VDII VIDGIAFQ Sbjct: 318 TVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVDIIGVIDGIAFQ 377 Query: 72 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKL 131 TNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKEIK LI DSV V+ GS L Sbjct: 378 TNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSVTNVDAGSAL 437 Query: 132 VEQAGVTMHDIVTSIRRVTDVMSEITSANSEQSSGIEQVNEAIIQIDDMTQQNAALVEQA 191 VE+AG TM +IV S+RRVTD++ EIT+A+ EQ SGIE+V+ A+ Q+DD TQQNAALVEQA Sbjct: 438 VEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDATQQNAALVEQA 497 Query: 192 AAAAQSLQDQAANLTALVSVFKLD 215 AAAAQSLQ+QA +LT +V+ F+LD Sbjct: 498 AAAAQSLQEQADSLTQVVAQFRLD 521 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 142/222 (63%), Positives = 175/222 (78%), Gaps = 9/222 (4%) Query: 10 TXTVKQNAENAQQANQLAVAASDVAVQGGSIVSQVVQTMESINASSQKVVDIISVIDGIA 69 T TVKQNAENA+QA+QLA++AS+ A +GG +V+ VVQTM I SSQK+ DI SVIDGIA Sbjct: 313 TATVKQNAENARQASQLALSASETAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIA 372 Query: 70 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGS 129 FQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AAKEIK LI DSV +V+ GS Sbjct: 373 FQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGS 432 Query: 130 KLVEQAGVTMHDIVTSIRRVTDVMSEITSANSEQSSGIEQVNEAIIQIDDMTQQNAALVE 189 LVE AG TM DIV ++ RVTD+M EI SA+ EQS GI+Q+ +A+ ++D +TQQNA+LVE Sbjct: 433 VLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVE 492 Query: 190 QAAAAAQSLQDQAANLTALVSVFKL---------DARQLNAP 222 ++A+AA SL++QA+ LT +SVF L D R++ P Sbjct: 493 ESASAAASLEEQASMLTQAMSVFVLSVDNSNSTSDVRKVKQP 534 >PA0176 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas aeruginosa Length = 679 Score = 259 bits (662), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 154/230 (66%), Positives = 184/230 (80%), Gaps = 8/230 (3%) Query: 10 TXTVKQNAENAQQANQLAVAASDVAVQGGSIVSQVVQTMESINASSQKVVDIISVIDGIA 69 T TVK NAENA+QAN LA AS+VA QGG++V +VV TM SIN S++K+ DII VIDGIA Sbjct: 430 TSTVKLNAENARQANSLAANASEVATQGGTVVQKVVSTMSSINESARKIADIIGVIDGIA 489 Query: 70 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGS 129 FQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA+AAKEIK LI DSV KVENG+ Sbjct: 490 FQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAAAAKEIKTLISDSVDKVENGN 549 Query: 130 KLVEQAGVTMHDIVTSIRRVTDVMSEITSANSEQSSGIEQVNEAIIQIDDMTQQNAALVE 189 LV QAG TM DIV +IRRVTD+MSEI +A++EQS+GIE+VN A+ Q+DDMTQQNAALVE Sbjct: 550 TLVAQAGQTMSDIVVAIRRVTDIMSEIAAASAEQSTGIEEVNSAVSQMDDMTQQNAALVE 609 Query: 190 QAAAAAQSLQDQAANLTALVSVFKLDARQLNAPPPTQRTIDITPMHPELP 239 +AAAAA+++Q+QA L V+VF+LD PP+ + + P P Sbjct: 610 EAAAAAEAMQEQAGLLNQSVAVFRLDT------PPS--VVQLASARPSAP 651 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 259 bits (661), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 139/203 (68%), Positives = 168/203 (82%) Query: 12 TVKQNAENAQQANQLAVAASDVAVQGGSIVSQVVQTMESINASSQKVVDIISVIDGIAFQ 71 TV NAENA+QANQLA AS VA +GG +VSQVV M+ IN S+K+ DII VIDGIAFQ Sbjct: 311 TVGNNAENARQANQLASGASSVAAEGGEVVSQVVGMMKGINDGSKKIADIIGVIDGIAFQ 370 Query: 72 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKL 131 TNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI SV +VE G+ L Sbjct: 371 TNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKALITSSVEQVEQGTTL 430 Query: 132 VEQAGVTMHDIVTSIRRVTDVMSEITSANSEQSSGIEQVNEAIIQIDDMTQQNAALVEQA 191 V++AG TM IV +I+RV+++++EI+SA++EQSSG+ QV +A+ Q+D+ TQQNAALVEQ+ Sbjct: 431 VDRAGATMEQIVGAIQRVSNIVAEISSASAEQSSGVSQVGQAVSQMDEATQQNAALVEQS 490 Query: 192 AAAAQSLQDQAANLTALVSVFKL 214 AAAA SLQ QA L V+VFKL Sbjct: 491 AAAASSLQGQAQQLVQAVAVFKL 513