BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0120.p         (186 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2144 [G] COG1653 ABC-type sugar transport system, periplasmic...   177   1e-44
PA2338 [G] COG1653 ABC-type sugar transport system, periplasmic ...   174   8e-44
SMc01496 [G] COG1653 ABC-type sugar transport system, periplasmi...   167   2e-41
AGl841 [G] COG1653 ABC-type sugar transport system, periplasmic ...   162   4e-40
mll4927 [G] COG1653 ABC-type sugar transport system, periplasmic...   154   1e-37

>RSc2144 [G] COG1653 ABC-type sugar transport system, periplasmic component
           Rso Ralstonia solanacearum
          Length = 441

 Score =  177 bits (449), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/133 (60%), Positives = 101/133 (75%)

Query: 41  IATTNNPDMLVLQRLSSVFEKSHPDIRLNWHVMDEGVLRERVTTDITTSGGKFDLMTIGL 100
           IAT NNPDML L++LS+ FEK+HPDI+LNW +++E VLR+R TTDITT  G+FD+M IG 
Sbjct: 32  IATLNNPDMLELKKLSATFEKNHPDIKLNWVILEENVLRQRATTDITTGSGQFDVMAIGT 91

Query: 101 MSTPLWAEQGWLLPMDDLPSGYDVDDLLKPVRAGLSSKGKLYALPFYAESSMTYYRKDLF 160
             TPLW ++GWL PM +LP+ YD+ D++K  R  LS  G+LYALPFY ESSMT+YRKDLF
Sbjct: 92  YETPLWGKRGWLAPMANLPADYDLADVIKTARDSLSYDGQLYALPFYVESSMTFYRKDLF 151

Query: 161 AQKKLVXAASPAF 173
           A K L     P +
Sbjct: 152 AAKGLTMPDQPTY 164


>PA2338 [G] COG1653 ABC-type sugar transport system, periplasmic component
           Pae Pseudomonas aeruginosa
          Length = 436

 Score =  174 bits (442), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 99/140 (70%)

Query: 34  DAVSVVNIATTNNPDMLVLQRLSSVFEKSHPDIRLNWHVMDEGVLRERVTTDITTSGGKF 93
                + IAT NN DM+ +QRLS VFE+SHPDI L W V++E VLR+R+TTDI T GG+F
Sbjct: 21  QGAETLTIATVNNNDMIRMQRLSKVFEESHPDIALKWVVLEENVLRQRLTTDIATQGGQF 80

Query: 94  DLMTIGLMSTPLWAEQGWLLPMDDLPSGYDVDDLLKPVRAGLSSKGKLYALPFYAESSMT 153
           DL+TIG+    LW  +GWL PM  LP+ Y +DDLL  VR GLS KG LYALPFYAE+S+T
Sbjct: 81  DLLTIGMYEAALWGAKGWLEPMSGLPADYALDDLLPSVRDGLSVKGTLYALPFYAEASIT 140

Query: 154 YYRKDLFAQKKLVXAASPAF 173
           YYRKDLF Q  L     P +
Sbjct: 141 YYRKDLFQQAGLRMPEQPTW 160


>SMc01496 [G] COG1653 ABC-type sugar transport system, periplasmic component
           Sme Sinorhizobium meliloti
          Length = 436

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/144 (53%), Positives = 99/144 (68%)

Query: 30  FAGADAVSVVNIATTNNPDMLVLQRLSSVFEKSHPDIRLNWHVMDEGVLRERVTTDITTS 89
            AG      + IAT NN DM+ +Q+L+  F   +PDI+L W  ++E VLR+RVTTDI T 
Sbjct: 16  LAGLAQAETLTIATVNNGDMIRMQKLTDDFTSKNPDIQLEWVTLEENVLRQRVTTDIATK 75

Query: 90  GGKFDLMTIGLMSTPLWAEQGWLLPMDDLPSGYDVDDLLKPVRAGLSSKGKLYALPFYAE 149
           GG++D+MTIG    P+WA+QGWLLP+DDL   YDVDDLL  +R+GL+  GKLYA PFY E
Sbjct: 76  GGQYDIMTIGTYEVPIWAKQGWLLPLDDLGPEYDVDDLLPAIRSGLTIDGKLYAAPFYGE 135

Query: 150 SSMTYYRKDLFAQKKLVXAASPAF 173
           SSM  YRKDLF +  L    +P +
Sbjct: 136 SSMVMYRKDLFEKAGLTMPDAPTW 159


>AGl841 [G] COG1653 ABC-type sugar transport system, periplasmic component
           Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 475

 Score =  162 bits (410), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 101/144 (70%)

Query: 30  FAGADAVSVVNIATTNNPDMLVLQRLSSVFEKSHPDIRLNWHVMDEGVLRERVTTDITTS 89
           F+   +   + IAT NN DM+ +Q L+S F   +PDI++ W  ++E VLRERVTTDI T+
Sbjct: 54  FSTLASAETLTIATVNNGDMIRMQGLTSDFTTKNPDIKVEWVTLEENVLRERVTTDIATN 113

Query: 90  GGKFDLMTIGLMSTPLWAEQGWLLPMDDLPSGYDVDDLLKPVRAGLSSKGKLYALPFYAE 149
           GG++D+MTIG    P+WA+QGWLLP++ L   YDVDD+L  +R GLS++GKLYA PFY E
Sbjct: 114 GGQYDIMTIGNYEVPIWAKQGWLLPLEKLGEKYDVDDILPAIRGGLSAEGKLYAAPFYGE 173

Query: 150 SSMTYYRKDLFAQKKLVXAASPAF 173
           S+M  YRKDLF +  L    +P +
Sbjct: 174 SAMIMYRKDLFEKAGLKMPDNPTW 197


>mll4927 [G] COG1653 ABC-type sugar transport system, periplasmic component
           Mlo Mesorhizobium loti
          Length = 436

 Score =  154 bits (389), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 92/135 (68%)

Query: 39  VNIATTNNPDMLVLQRLSSVFEKSHPDIRLNWHVMDEGVLRERVTTDITTSGGKFDLMTI 98
           + IAT NN DM+ +Q+L+  F K++PDI+LNW  ++E VLRERVTTDI T GG++D+MTI
Sbjct: 25  ITIATVNNGDMVRMQKLTEDFTKANPDIQLNWVTLEENVLRERVTTDIATKGGQYDVMTI 84

Query: 99  GLMSTPLWAEQGWLLPMDDLPSGYDVDDLLKPVRAGLSSKGKLYALPFYAESSMTYYRKD 158
           G    P+WA+Q WLLP+D L   YD  D++  +  GLS  GKLYA PFY ESS   YRKD
Sbjct: 85  GTYEVPIWAKQSWLLPLDKLGDDYDAKDIIPAIAGGLSVDGKLYAAPFYGESSFVMYRKD 144

Query: 159 LFAQKKLVXAASPAF 173
           L  +  L    +P +
Sbjct: 145 LMEKAGLKMPDAPTW 159