BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0113.p         (91 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2143 [G] COG1175 ABC-type sugar transport systems, permease c...   151   4e-37
SMc01497 [G] COG1175 ABC-type sugar transport systems, permease ...   126   1e-29
PA2339 [G] COG1175 ABC-type sugar transport systems, permease co...   123   1e-28
mll4925 [G] COG1175 ABC-type sugar transport systems, permease c...   111   4e-25
AGl839 [G] COG1175 ABC-type sugar transport systems, permease co...   109   2e-24

>RSc2143 [G] COG1175 ABC-type sugar transport systems, permease components
           Rso Ralstonia solanacearum
          Length = 317

 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 83/90 (92%)

Query: 2   LPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTETTNLTYLVYSIGLQQFDIGIASA 61
           LPHLKRAI VV+M+ETIFLLS+FAEI+TTT GGPG  TTNL+YL+Y++GLQQFD+G+ASA
Sbjct: 228 LPHLKRAIAVVVMMETIFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASA 287

Query: 62  GGIFAVVLANIVSFFLVRMLAKNLKGANEK 91
           GGI AVV+ANIVSFFLVRMLAKNLKG  ++
Sbjct: 288 GGILAVVVANIVSFFLVRMLAKNLKGEYQQ 317


>SMc01497 [G] COG1175 ABC-type sugar transport systems, permease components
           Sme Sinorhizobium meliloti
          Length = 290

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 75/87 (86%)

Query: 1   VLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTETTNLTYLVYSIGLQQFDIGIAS 60
           VLPHL RAIT+VI+I+TIFLLSVFAEI  TT GGPGT++TNLT+LVY+  L QFD+G AS
Sbjct: 204 VLPHLSRAITMVILIQTIFLLSVFAEILVTTNGGPGTQSTNLTFLVYAQALLQFDVGGAS 263

Query: 61  AGGIFAVVLANIVSFFLVRMLAKNLKG 87
           AGGI AV+LANIV+FFL+RM+ K L+ 
Sbjct: 264 AGGIIAVILANIVAFFLMRMIGKTLEA 290


>PA2339 [G] COG1175 ABC-type sugar transport systems, permease components
           Pae Pseudomonas aeruginosa
          Length = 310

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 71/84 (84%)

Query: 2   LPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTETTNLTYLVYSIGLQQFDIGIASA 61
           LPHL R I VV+MIETIFLLSVFAEIFTTT+GGPG E+TNL YL+Y+  L QFD+G+ASA
Sbjct: 223 LPHLARPIAVVLMIETIFLLSVFAEIFTTTSGGPGYESTNLAYLIYNQALLQFDVGMASA 282

Query: 62  GGIFAVVLANIVSFFLVRMLAKNL 85
           GG+ AV++ANI +  LVRM+ KNL
Sbjct: 283 GGLIAVLIANIAAIVLVRMIGKNL 306


>mll4925 [G] COG1175 ABC-type sugar transport systems, permease components
           Mlo Mesorhizobium loti
          Length = 293

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 67/85 (78%)

Query: 2   LPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTETTNLTYLVYSIGLQQFDIGIASA 61
           LPH+ RAITVVI+I+TIFLLSV+AEI  TT GGPG  +TNL +LVY   L +F IG ASA
Sbjct: 208 LPHMSRAITVVILIQTIFLLSVYAEILVTTNGGPGYASTNLPFLVYQKALLEFKIGQASA 267

Query: 62  GGIFAVVLANIVSFFLVRMLAKNLK 86
           GG+ AV+LANIV+FF +R + KNL 
Sbjct: 268 GGVIAVILANIVAFFAMRAVGKNLD 292


>AGl839 [G] COG1175 ABC-type sugar transport systems, permease components
           Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 306

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 66/85 (77%)

Query: 2   LPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTETTNLTYLVYSIGLQQFDIGIASA 61
           LPHL RAITVVI+I+TIFLL V+AEI  TT GGPG  +TNL +L+Y   L  +D+G ASA
Sbjct: 221 LPHLARAITVVILIQTIFLLGVYAEILVTTNGGPGYASTNLAFLIYRTALLGYDVGGASA 280

Query: 62  GGIFAVVLANIVSFFLVRMLAKNLK 86
           GGI AVVLANIV+ FL+R + KNL 
Sbjct: 281 GGIIAVVLANIVAIFLMRAVGKNLD 305