BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0112.p (231 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2143 [G] COG1175 ABC-type sugar transport systems, permease c... 258 6e-69 AGl839 [G] COG1175 ABC-type sugar transport systems, permease co... 241 8e-64 AGl3284 [G] COG1175 ABC-type sugar transport systems, permease c... 241 1e-63 mll4925 [G] COG1175 ABC-type sugar transport systems, permease c... 237 1e-62 PA2339 [G] COG1175 ABC-type sugar transport systems, permease co... 232 5e-61 >RSc2143 [G] COG1175 ABC-type sugar transport systems, permease components Rso Ralstonia solanacearum Length = 317 Score = 258 bits (660), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 119/182 (65%), Positives = 153/182 (84%) Query: 37 LQTPAVALLFLWMIVPLAMTVYFSFNRYNLMSPDQTGFVGLENYQFLLEDPAFWPSIANT 96 L +P+VA L LWM +PLAMT++FSF+RYNL++PD GF G +NY FL DP+F P+I +T Sbjct: 36 LVSPSVAALLLWMSIPLAMTIWFSFSRYNLLNPDVKGFAGFDNYHFLATDPSFGPAIWHT 95 Query: 97 ALLIGSVLCISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVY 156 LIG+VL I+V+GG L AVLFD+ F G+GIARLL+I PFFVMPTV+ALIWKNMI+HPVY Sbjct: 96 LALIGAVLVITVVGGVLTAVLFDRKFYGQGIARLLMIAPFFVMPTVSALIWKNMILHPVY 155 Query: 157 GMLAFVMRHLGMAPIDWLAEYPMLSVIIIVSWQWIPFAFLILLTALQSLDGDQKEAAQLD 216 G++A MR +G+ PIDW A+YP+ +V+IIV+WQW+PFAFLIL TA+QSLD +QKEAA++D Sbjct: 156 GLVASAMRAVGLTPIDWFADYPLTAVVIIVAWQWLPFAFLILFTAIQSLDQEQKEAARID 215 Query: 217 GA 218 GA Sbjct: 216 GA 217 >AGl839 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 306 Score = 241 bits (616), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 112/184 (60%), Positives = 146/184 (79%) Query: 35 RLLQTPAVALLFLWMIVPLAMTVYFSFNRYNLMSPDQTGFVGLENYQFLLEDPAFWPSIA 94 R++ P+V LL +WMIVPLAMT++FSF YNL++P F GL NYQ+ DPAF+ SI Sbjct: 27 RVMLAPSVLLLLVWMIVPLAMTLWFSFQNYNLLNPANVSFAGLFNYQYFYTDPAFFQSIW 86 Query: 95 NTALLIGSVLCISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHP 154 NT L++G VL I+V+GG +A+L D G+GI R+++I PFFVMP VAAL+WKNMIMHP Sbjct: 87 NTLLIVGGVLVITVVGGIAIALLLDNDIFGQGIVRIMIISPFFVMPPVAALVWKNMIMHP 146 Query: 155 VYGMLAFVMRHLGMAPIDWLAEYPMLSVIIIVSWQWIPFAFLILLTALQSLDGDQKEAAQ 214 YG+LA + R G+ P+DW A++P+LS+IIIV+WQW+PFA LILLTALQSLDG+QKEAA+ Sbjct: 147 GYGVLADLSRFFGLQPVDWFAQFPLLSIIIIVAWQWLPFATLILLTALQSLDGEQKEAAE 206 Query: 215 LDGA 218 +DGA Sbjct: 207 MDGA 210 >AGl3284 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 290 Score = 241 bits (615), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 112/184 (60%), Positives = 146/184 (79%) Query: 35 RLLQTPAVALLFLWMIVPLAMTVYFSFNRYNLMSPDQTGFVGLENYQFLLEDPAFWPSIA 94 R++ P+V LL +WMIVPLAMT++FSF YNL++P F GL NYQ+ DPAF+ SI Sbjct: 11 RVMLAPSVLLLLVWMIVPLAMTLWFSFQNYNLLNPANVSFAGLFNYQYFYTDPAFFQSIW 70 Query: 95 NTALLIGSVLCISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHP 154 NT L++G VL I+V+GG +A+L D G+GI R+++I PFFVMP VAAL+WKNMIMHP Sbjct: 71 NTLLIVGGVLLITVVGGIAIALLLDNDIFGQGIVRIMIISPFFVMPPVAALVWKNMIMHP 130 Query: 155 VYGMLAFVMRHLGMAPIDWLAEYPMLSVIIIVSWQWIPFAFLILLTALQSLDGDQKEAAQ 214 YG+LA + R G+ P+DW A++P+LS+IIIV+WQW+PFA LILLTALQSLDG+QKEAA+ Sbjct: 131 GYGVLADLSRFFGLQPVDWFAQFPLLSIIIIVAWQWLPFATLILLTALQSLDGEQKEAAE 190 Query: 215 LDGA 218 +DGA Sbjct: 191 MDGA 194 >mll4925 [G] COG1175 ABC-type sugar transport systems, permease components Mlo Mesorhizobium loti Length = 293 Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 112/184 (60%), Positives = 142/184 (77%) Query: 35 RLLQTPAVALLFLWMIVPLAMTVYFSFNRYNLMSPDQTGFVGLENYQFLLEDPAFWPSIA 94 R + P+V LL +WM++PLA+T++FSF +YN ++P GFVG NY +PAF SI Sbjct: 14 RFMMAPSVVLLLVWMVIPLALTLWFSFQQYNPLNPIHDGFVGFSNYALFWSNPAFLQSIL 73 Query: 95 NTALLIGSVLCISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHP 154 NT +L+ SVL I+VIGG LLA+L DQP G+GI R+LVI PFFVMP VAAL+WKNMIMHP Sbjct: 74 NTLVLVISVLLITVIGGILLALLIDQPMWGQGIVRILVISPFFVMPPVAALVWKNMIMHP 133 Query: 155 VYGMLAFVMRHLGMAPIDWLAEYPMLSVIIIVSWQWIPFAFLILLTALQSLDGDQKEAAQ 214 YG+ A + R G PIDW ++PM ++IIIV+WQW+PFA LILLTALQSLDG+QKEAA+ Sbjct: 134 QYGVFADIARFFGAQPIDWFGQHPMTAIIIIVAWQWLPFATLILLTALQSLDGEQKEAAE 193 Query: 215 LDGA 218 +DGA Sbjct: 194 MDGA 197 >PA2339 [G] COG1175 ABC-type sugar transport systems, permease components Pae Pseudomonas aeruginosa Length = 310 Score = 232 bits (591), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 116/187 (62%), Positives = 142/187 (75%), Gaps = 1/187 (0%) Query: 33 PIRLLQTPAVALLFLWMIVPLAMTVYFSFNRYNLMSPDQTGFVGLENYQFLLEDPAFWPS 92 P LL +P+VALL LWMIVPL MT+YFS RYNL+ P + FVGLEN+ F + D F P Sbjct: 26 PGWLLVSPSVALLLLWMIVPLGMTLYFSLIRYNLLYPGENAFVGLENFTFFVTDAGFLPG 85 Query: 93 IANTALLIGSVLCISVIGGTLLAVLFDQ-PFRGRGIARLLVIGPFFVMPTVAALIWKNMI 151 NT LL+GSVL ISV G L+A L + F GRG R+L+I PFF+MPTV+AL+WKN+I Sbjct: 86 ALNTLLLVGSVLAISVAFGVLIAALLEAGEFFGRGAVRVLLISPFFIMPTVSALLWKNLI 145 Query: 152 MHPVYGMLAFVMRHLGMAPIDWLAEYPMLSVIIIVSWQWIPFAFLILLTALQSLDGDQKE 211 HPV G+LA V R G P+DWLA YP+LS+I+IVSWQW+PFA LIL+TA+QSLD +QKE Sbjct: 146 FHPVSGILAAVWRLFGAEPVDWLAHYPLLSIILIVSWQWLPFAILILMTAMQSLDQEQKE 205 Query: 212 AAQLDGA 218 AA+LDGA Sbjct: 206 AARLDGA 212