BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0105.p         (153 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF0077 Non COG                                                         79   5e-15
XF0078 Non COG                                                         77   1e-14
YPO0700 [NU] COG3539 P pilus assembly protein, pilin FimA Ype Ye...    70   2e-12
XF0080 Non COG                                                         62   4e-10
Z2200 [NU] COG3539 P pilus assembly protein, pilin FimA EcZ Esch...    58   9e-09

>XF0077 Non COG
          Length = 356

 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 91/162 (56%), Gaps = 19/162 (11%)

Query: 2   IVPQTCQVD--TPNVVVPMGSVASSSFTGTGSVSPARNFTISVNCSG--VAS----QVFM 53
           IV  TC+VD  + N+VV  GSV+S++F G GS  P R+FTI++ C G  VA     Q+ +
Sbjct: 204 IVTSTCEVDAGSKNIVVNFGSVSSNTFNGLGSKGPERDFTINLICQGGNVAEADQGQISV 263

Query: 54  TLTDQQTQANRTSTLGLTAAS-SARGVGIQILRRQGNTDTPISFGADSSTAGNTNQFLAF 112
            +   Q  + ++  L +T+AS +A  VGI+++     ++  + FG + +    T+     
Sbjct: 264 HIDGTQDSSGQSGVLAITSASDAASNVGIELVDLLTGSERQVVFGQNITLGRTTSN---A 320

Query: 113 SSTGEQIGATTIPFSARYIKT-AATIIPGTANGVATFTMSYQ 153
           SST       ++P  ARYI+T    + PG ANG ATFT+ YQ
Sbjct: 321 SST------LSLPIRARYIQTQKGKVSPGAANGTATFTIEYQ 356


>XF0078 Non COG
          Length = 354

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 31/168 (18%)

Query: 2   IVPQTCQVD--TPNVVVPMGSVASSSFTGTGSVSPARNFTISVNCSG------VASQVFM 53
           IV  TCQVD  + N+ V +GSV+S++F G GS  P R+FTI++ C G        +Q+ +
Sbjct: 202 IVTSTCQVDAGSKNIAVNIGSVSSNTFKGLGSKGPERDFTINLICQGGNVGEVDQAQISV 261

Query: 54  TLTDQQTQANRTSTLGLTAAS-SARGVGIQIL------RRQGNTDTPISFGADSSTAGNT 106
            +   Q  + ++  L +T+AS +A  VGI+++       RQ      I+ G  ++ A NT
Sbjct: 262 RIDGTQDSSGQSGVLAITSASDAATNVGIELVDLLTGSERQVVFGQAITLGRTATNASNT 321

Query: 107 NQFLAFSSTGEQIGATTIPFSARYIKT-AATIIPGTANGVATFTMSYQ 153
                FS          +P  ARYI+T A  +  GTANG ATFT+ YQ
Sbjct: 322 -----FS----------LPMRARYIQTQAGKVSAGTANGTATFTIEYQ 354


>YPO0700 [NU] COG3539 P pilus assembly protein, pilin FimA Ype Yersinia
           pestis
          Length = 368

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 6/149 (4%)

Query: 6   TCQVDTPNVVVPMGSVASSSFTGTGSVSPARNFTISVNCSGVASQVFMTLTDQQTQANRT 65
           TC +   ++VV +  + +SS    G  +  + F+I +      ++ ++T TD   +ANRT
Sbjct: 223 TCDLGATDIVVALDPIDTSSLQTQGDRAGGQAFSIPLGSCAKDAKPYITFTDSSNKANRT 282

Query: 66  STLGLTAASSARGVGIQILRRQGNTDTPISFGAD--SSTAGNTNQFLAFSSTGEQIGATT 123
           + L L+ +S+A GVG+ + +  GN    ++FGA+  S +A N  QFL  +ST    G+  
Sbjct: 283 NILSLSPSSTATGVGLVLEKSDGNL---VTFGAENASVSASNVGQFLIGTSTAAG-GSMP 338

Query: 124 IPFSARYIKTAATIIPGTANGVATFTMSY 152
           +  +ARYI+    +  G     A FT++Y
Sbjct: 339 LNLTARYIRAEGVLKSGNVKADAIFTVAY 367


>XF0080 Non COG
          Length = 320

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 21/164 (12%)

Query: 1   MIVPQTCQVDT--PNVVVPMGSVASSSFTGTGSVSPARNFTISVNCSG----VASQVFMT 54
            IV  TC+VD+   N+ V  G V S++F G  S  P  +F I++ C G     A Q  ++
Sbjct: 167 FIVTSTCEVDSGSKNIAVNFGEVPSTTFAGLSSKGPEHDFAINLICQGGNVAEADQGLIS 226

Query: 55  LTDQQTQANRT--STLGLTAAS-SARGVGIQILRRQGNTDTPISFGADSSTAGNTNQFLA 111
           +    TQ        L +T A+ +A  VGI+++      +  I FG          Q + 
Sbjct: 227 VRIDATQDKSMLPGVLAITPATDAASNVGIELVDVLNGNEHKIVFG----------QAIV 276

Query: 112 FSSTGEQIGATT-IPFSARYIKT-AATIIPGTANGVATFTMSYQ 153
              T     +T  +P   RYI+T    + PGTANG ATFT+ YQ
Sbjct: 277 LGRTPVNASSTLQLPMRGRYIQTQTGKVGPGTANGTATFTIEYQ 320


>Z2200 [NU] COG3539 P pilus assembly protein, pilin FimA EcZ Escherichia
           coli O157:H7 EDL933
          Length = 187

 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 74/159 (46%), Gaps = 25/159 (15%)

Query: 2   IVPQTCQVDTP--NVVVPMGSVASSSFTGTGSVSPARNFTISVN-C----SGVASQVFMT 54
           +V   C +D+   N  V +G V SS     G +S A  F I +N C    S  A+  F+ 
Sbjct: 45  VVNAACAIDSESMNQTVELGQVRSSRLAKAGDLSSAVGFNIKLNDCDTNVSSNAAVAFLG 104

Query: 55  LTDQQTQANRTSTLGLTAASSARGVGIQILRRQGNTDTPISFGADSSTAGNTNQFLAFSS 114
            T   T  + T  L  +AA SA+ VGIQIL R G  +  I  GA             FS+
Sbjct: 105 TT--VTSNDDTLALQSSAAGSAQNVGIQILDRTG--EVLILDGA------------TFSA 148

Query: 115 TGEQIGATTI-PFSARYIKTAATIIPGTANGVATFTMSY 152
             + I  T I PF ARYI    + + GTAN  ATF + Y
Sbjct: 149 KTDLIDGTNILPFQARYIALGQS-VAGTANADATFKVQY 186