BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0101.p         (101 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM3827 [GEPR] COG0477 Permeases of the major facilitator superf...    60   1e-09
dgoT [GEPR] COG0477 Permeases of the major facilitator superfami...    59   2e-09

>STM3827 [GEPR] COG0477 Permeases of the major facilitator superfamily Sty
          Salmonella typhimurium LT2
          Length = 445

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 6  AVTAGAAGPTGRATHVQKYMLAIFCAMSFILYLDRVNLAAAAGPIKDELGLSNTTLGLAF 65
          +VTA   G     T V  ++  + C      Y+DR NLA A+  I+ E G++   +G  F
Sbjct: 19 SVTAAQPGRRRYLTLVMIFITVVIC------YVDRANLAVASMHIQKEFGITKAEMGYVF 72

Query: 66 SAFGYTYAIFQIIGGWFAD-XGSRL 89
          SAF + Y + QI GGWF D  GSRL
Sbjct: 73 SAFAWLYTLCQIPGGWFLDRIGSRL 97


>dgoT [GEPR] COG0477 Permeases of the major facilitator superfamily Eco
          Escherichia coli K12
          Length = 445

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 5/84 (5%)

Query: 7  VTAGAAGPTGRATHVQKYMLAIFCAMSFILYLDRVNLAAAAGPIKDELGLSNTTLGLAFS 66
          +   AA P GR  ++   M+ I      I Y+DR NLA A+  I++E G++   +G  FS
Sbjct: 18 IPVNAAKP-GRRRYLTLVMIFITVV---ICYVDRANLAVASAHIQEEFGITKAEMGYVFS 73

Query: 67 AFGYTYAIFQIIGGWFAD-XGSRL 89
          AF + Y + QI GGWF D  GSR+
Sbjct: 74 AFAWLYTLCQIPGGWFLDRVGSRV 97