BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0097.p         (84 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3975 [H] COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidi...    59   4e-09

>PA3975 [H] COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
           Pae Pseudomonas aeruginosa
          Length = 265

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 47/77 (61%)

Query: 1   VVNRWFGPEGAFASWSWPRLPDEFHGSGCTLAAALSAQLAQGLGMRDAIEAAQQYCQHAL 60
           V NR +  +G+  +++  RLP  +HGSGCTLA+AL+ ++A G  +  A+++A  Y    L
Sbjct: 184 VHNRLYSRDGSRRTFTCQRLPGSYHGSGCTLASALAGRIALGEALHGAVQSALDYTWRTL 243

Query: 61  ATSYAIAAGQRIPNRVP 77
             + +   GQ +P R+P
Sbjct: 244 RDAESPGHGQYVPRRLP 260