BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0096.p         (237 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF2208 [H] COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidi...    60   6e-09
PA3975 [H] COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidi...    59   6e-09

>AF2208 [H] COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
           Afu Archaeoglobus fulgidus
          Length = 243

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 43/65 (66%)

Query: 69  GGAGMQADIPAISALGCHPLSVPTALTVQDNVSVFAVHPIDAELIRHQAQVLIDRFDIRA 128
           GGAG+ ADI    A+G +P SV T+LTVQ+   V A  P++AE+IR Q + +I+   I  
Sbjct: 14  GGAGVSADIKTAKAIGLYPASVITSLTVQNTCGVKAAIPVEAEVIREQLRAVIEDMKIDC 73

Query: 129 VKLGI 133
           +K+G+
Sbjct: 74  IKIGL 78


>PA3975 [H] COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
           Pae Pseudomonas aeruginosa
          Length = 265

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 55  RAVKLGIAGNRRNGGGAGMQADIPAISALGCHPLSVPTALTVQDNVSVFAVHPIDAELIR 114
           R V L ++G+  +GG AG+QADI A+ A GCH     TALTVQD V+V     +D E + 
Sbjct: 7   RPVVLCLSGHDPSGG-AGLQADIEALLAQGCHAAPAVTALTVQDTVNVSDFRVLDREWVL 65

Query: 115 HQAQVLIDRFDIRAVKLGIAGN 136
            QA  ++    + AVKLG+ G+
Sbjct: 66  AQANAVLADLPVAAVKLGMLGS 87