BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0077.p         (97 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0506 [J] COG0042 tRNA-dihydrouridine synthase Rso Ralstonia s...   157   5e-39
PA4852 [J] COG0042 tRNA-dihydrouridine synthase Pae Pseudomonas ...   135   3e-32
VC0291 [J] COG0042 tRNA-dihydrouridine synthase Vch Vibrio cholerae   116   2e-26
STM3384 [J] COG0042 tRNA-dihydrouridine synthase Sty Salmonella ...   110   9e-25
yhdG [J] COG0042 tRNA-dihydrouridine synthase Eco Escherichia co...   110   1e-24

>RSc0506 [J] COG0042 tRNA-dihydrouridine synthase Rso Ralstonia
          solanacearum
          Length = 356

 Score =  157 bits (398), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 71/95 (74%), Positives = 85/95 (89%)

Query: 1  VNIGPHSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRTNH 60
          + IGPH LRNN+FVAPMAGVTDRPFRQLCK+LGAGYAVSEM AS+ +LW+SE+T RR NH
Sbjct: 1  MQIGPHILRNNLFVAPMAGVTDRPFRQLCKRLGAGYAVSEMVASNAQLWKSERTMRRANH 60

Query: 61 DGEMEPKAVQIAGADPAMLADCAKHNVDRGAQIID 95
           GE+EP AVQIAGA+P M+A+ A++NV+RGAQIID
Sbjct: 61 TGEVEPIAVQIAGAEPMMMAEAARYNVERGAQIID 95


>PA4852 [J] COG0042 tRNA-dihydrouridine synthase Pae Pseudomonas
          aeruginosa
          Length = 332

 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 75/95 (78%)

Query: 1  VNIGPHSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRTNH 60
          V IGP++L N + +APMAGVTDRPFRQLC++LGAG  VSEM  SD RLW S K+  R  H
Sbjct: 4  VRIGPYTLPNRLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRKSRLRLIH 63

Query: 61 DGEMEPKAVQIAGADPAMLADCAKHNVDRGAQIID 95
          DGE EP++VQIAG DPAMLA+ A+ NV+ GAQIID
Sbjct: 64 DGEDEPRSVQIAGGDPAMLAEAAQRNVELGAQIID 98


>VC0291 [J] COG0042 tRNA-dihydrouridine synthase Vch Vibrio cholerae
          Length = 331

 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 73/95 (76%)

Query: 1   VNIGPHSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRTNH 60
           + IG + L+NN+ VAPMAGVTDRPFR+LC + GAG AVSEM + +P LW++ K+  R  H
Sbjct: 10  LKIGNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVH 69

Query: 61  DGEMEPKAVQIAGADPAMLADCAKHNVDRGAQIID 95
           +GE   ++VQIAG+DP ++A+ A+ +V+ GAQIID
Sbjct: 70  EGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIID 104


>STM3384 [J] COG0042 tRNA-dihydrouridine synthase Sty Salmonella
          typhimurium LT2
          Length = 321

 Score =  110 bits (274), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 69/95 (72%)

Query: 1  VNIGPHSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRTNH 60
          + IG + LRN +  APMAG+TDRPFR LC ++GAG  VSEM +S+P++W+S+K+  R  H
Sbjct: 1  MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60

Query: 61 DGEMEPKAVQIAGADPAMLADCAKHNVDRGAQIID 95
            E   + VQIAG+DP  +AD A+ NV+ GAQIID
Sbjct: 61 VDEPGIRTVQIAGSDPVEMADAARINVESGAQIID 95


>yhdG [J] COG0042 tRNA-dihydrouridine synthase Eco Escherichia coli K12
          Length = 321

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 69/95 (72%)

Query: 1  VNIGPHSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRTNH 60
          + IG + LRN +  APMAG+TDRPFR LC ++GAG  VSEM +S+P++W+S+K+  R  H
Sbjct: 1  MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH 60

Query: 61 DGEMEPKAVQIAGADPAMLADCAKHNVDRGAQIID 95
            E   + VQIAG+DP  +AD A+ NV+ GAQIID
Sbjct: 61 IDEPGIRTVQIAGSDPKEMADAARINVESGAQIID 95